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Energy and Environment Directorate

Publications

Ecology Group

472 publications found:

2018

  • Duncan JP, Z Deng, JL Arnold, T Fu, BA Trumbo, TJ Carlson, and D Zhou. 2018. "Physical and Ecological Evaluation of a Fish-Friendly Surface Spillway." Ecological Engineering 110:107–116.  doi:10.1016/j.ecoleng.2017.10.012

2017

  • Arntzen EV, and RP Mueller. 2017. "Video-Based Electroshocking Platform to Identify Lamprey Ammocoete Habitat: Field Validation and New Discoveries in the Columbia River Basin." North American Journal of Fisheries Management 37(3):676-681.  doi:10.1080/02755947.2017.1310152
  • Ashton NK, SA Liss, RW Walker, RS Brown, C Klassen, S Backhouse, P Bates, and RL Townsend. 2017. "How Low Can You Go? Determining a Size Threshold for Implantation of a New Acoustic Transmitter in Age-0 White Sturgeon." Northwest Science 91(1):69-80.  doi:10.3955/046.091.0108
  • Baumgartner LJ, G Thorncraft, O Phonekhampeng, CA Boys, A Navarro, W Robinson, RS Brown, and Z Deng. 2017. "High fluid shear strain causes injury in Silver shark: Preliminary implications for Mekong hydropower turbine design." Fisheries Management and Ecology 24(3):193-198.  doi:10.1111/fme.12213
  • Burger J, M Gochfeld, AL Bunn, JL Downs, C Jeitner, T Pittfield, JA Salisbury, and DS Kosson. 2017. "A Methodology to Evaluate Ecological Resources and Risk Using Two Case Studies at the Department of Energy’s Hanford Site." Environmental Management 59(3):357-372.  doi:10.1007/s00267-016-0798-8
  • Colotelo AHA, AE Goldman, KA Wagner, RS Brown, Z Deng, and MC Richmond. 2017. "A Comparison of Metrics to Evaluate the Effects of Hydro-facility Passage Stressors on Fish." Environmental Reviews 25(1):1-11.  doi:10.1139/er-2016-0006
  • Deng Z, JJ Martinez, H Li, RA Harnish, CM Woodley, JS Hughes, X Li, T Fu, J Lu, GA Mcmichael, MA Weiland, MB Eppard, JR Skalski, and RL Townsend. 2017. "Comparing the survival rate of juvenile Chinook salmon migrating through hydropower systems using injectable and surgical acoustic transmitters." Scientific Reports 7:42999.  doi:10.1038/srep42999
  • Deng Z, JP Duncan, JL Arnold, T Fu, JJ Martinez, J Lu, PS Titzler, D Zhou, and RP Mueller. 2017. "Evaluation of Boundary Dam Spillway Using an Autonomous Sensor Fish Device." Journal of Hydro-Environment Research 14:85-92.  doi:10.1016/j.jher.2016.10.004
  • Lee BD, JJ Moran, MK Nims, and DL Saunders. 2017. Letter Report: Stable Hydrogen and Oxygen Isotope Analysis of B-Complex Perched Water SamplesPNNL-26341, Pacific Northwest National Laboratory, Richland, WA. 
  • Li X, CR Vernon, MI Hejazi, RP Link, L Feng, Y Liu, and LT Rauchenstein. 2017. "Xanthos - A Global Hydrologic Model." Journal of Open Research Software 5(1):21.  doi:10.5334/jors.181
  • McIntyre JI, CE Aalseth, TR Alexander, HO Back, BJ Bellgraph, TW Bowyer, VD Chipman, MW Cooper, AR Day, S Drellack, MP Foxe, BG Fritz, JC Hayes, PH Humble, ME Keillor, RR Kirkham, EJ Krogstad, JD Lowrey, EK Mace, MF Mayer, BD Milbrath, AC Misner, SM Morley, ME Panisko, KB Olsen, MD Ripplinger, A Seifert, and R Suarez. 2017. "Measurements of Argon-39 at theU20az Underground Nuclear Explosion Site." Journal of Environmental Radioactivity 178-179:28-35.  doi:10.1016/j.jenvrad.2017.07.013
  • Mueller RP, JM Janak, SA Liss, RS Brown, Z Deng, and RA Harnish. 2017. "Retention and Effects of Miniature Transmitters in Juvenile American Eels." Fisheries Research 195:52-58.  doi:10.1016/j.fishres.2017.06.017
  • Neeway JJ, RM Asmussen, BPG Parruzot, E Cordova, BD Williams, II Leavy, JR Stephenson, and EM McElroy. 2017. FY2016 ILAW Glass Corrosion Testing with the Single-Pass Flow-Through MethodPNNL-26169; RPT-IGTP-013 Rev. 0.0, Pacific Northwest National Laboratory, Richland, WA. 
  • Truex MJ, JE Szecsody, N Qafoku, CE Strickland, JJ Moran, BD Lee, MMV Snyder, AR Lawter, CT Resch, BN Gartman, L Zhong, MK Nims, DL Saunders, BD Williams, JA Horner, II Leavy, SR Baum, BB Christiansen, RE Clayton, EM McElroy, D Appriou, KJ Tyrrell, and ML Striluk. 2017. Contaminant Attenuation and Transport Characterization of 200-DV-1 Operable Unit Sediment SamplesPNNL-26208; RPT-DVZ-AFRI-037, Pacific Northwest National Laboratory, Richland, WA. 

2016

  • Diefenderfer HL, AB Borde, IA Sinks, VI Cullinan, and SA Zimmerman. 2016. Columbia Estuary Ecosystem Restoration Program: Restoration Design Challenges for Topographic Mounds, Channel Outlets, and Reed CanarygrassPNNL-24676, Pacific Northwest National Laboratory, Richland, WA. 
  • Fu T, Z Deng, JP Duncan, D Zhou, TJ Carlson, GE Johnson, and H Hou. 2016. "Assessing Hydraulic Conditions through Francis turbines using an autonomous sensor device." Renewable Energy 99:1244-1252.  doi:10.1016/j.renene.2016.08.029
  • Snyder MMV, GV Last, JR Stephenson, and RE Clayton. 2016. Analytical Data Report for Sediment Samples Collected From 116-KE-3 and UPR-100-K-1; Boreholes C8796 and C8796PNNL-25276, Pacific Northwest National Laboratory, Richland, WA. 
  • Tagestad JD, ML Brooks, VI Cullinan, JL Downs, and R McKinley. 2016. "Precipitation regime classification for the Mojave Desert: Implications for Fire Occurrence." Journal of Arid Environments 124:388-397 .  doi:10.1016/j.jaridenv.2015.09.002
  • Asmussen RM, CI Pearce, AR Lawter, JJ Neeway, BL Miller, BD Lee, NM Washton, JR Stephenson, RE Clayton, ME Bowden, EC Buck, E Cordova, N Qafoku, and BD Williams. 2016. Getter Incorporation into Cast Stone and Solid State CharacterizationsPNNL-25577 Rev. 0;RPT-SLAW-003 Rev A, Pacific Northwest National Laboratory, Richland, WA. 
  • Boys CA, W Robinson, B Miller, B Pflugrath, LJ Baumgartner, A Navarro, RS Brown, and Z Deng. 2016. "How low can they go when going with the flow? Tolerance of egg and larval fishes to rapid decompression." Biology Open 5(6):786-793.  doi:10.1242/bio.017491
  • Boys CA, W Robinson, B Miller, BD Pflugrath, LJ Baumgartner, A Navarro, RS Brown, and Z Deng. 2016. "A piecewise regression approach for determining biologically relevant hydraulic thresholds for the protection of fish at river infrastructure." Journal of Fish Biology 88(5):1677–1692.  doi:10.1111/jfb.12910
  • Burger J, M Gochfeld, AL Bunn, JL Downs, C Jeitner, T Pittfield, and JA Salisbury. 2016. "Functional Remediation Components: A Conceptual Method of Evaluating the Effects of Remediation on Risks to Ecological Receptors." Journal of Toxicology and Environmental Health Part A 79(21):957-968.  doi:10.1080/15287394.2016.1201026
  • Copping AE, SA Breithaupt, JM Whiting, ME Grear, JD Tagestad, and GA Shelton. 2016. "Likelihood of a Marine Vessel Accident from Wind Energy Development in the Atlantic." Wind Energy 19(9):1557-1566.  doi:10.1002/we.1935
  • Deng Z, AHA Colotelo, RS Brown, and TJ Carlson. 2016. "Environmental Issues Related to Conventional Hydropower." Chapter 38 in Alternative Energy and Shale Gas Encyclopedia, ed. JH Lehr, J Keeley and TB Kingery, pp. 404-409.  John Wiley & Sons, Inc., Hoboken, NJ.  doi:10.1002/9781119066354.ch38
  • Deng Z, TJ Carlson, GR Ploskey, RS Brown, GE Johnson, and AHA Colotelo. 2016. "Experimental and numerical modeling tools for conventional hydropower systems." Chapter 44 in Alternative Energy and Shale Gas Encyclopedia, ed. JH Lehr, J Keeley and TB Kingery, pp. 448-464.  John Wiley & Sons, Inc., Hoboken, NJ.  doi:10.1002/9781119066354.ch44
  • Fritz BG, RD Mackley, and EV Arntzen. 2016. "Conducting Slug Tests in Mini-Piezometers." Ground Water 54(2):291-295.  doi:10.1111/gwat.12335
  • Geist DR, AHA Colotelo, TJ Linley, KA Wagner, and AL Miracle. 2016. "Effects of a Novel Fish Transport System on the Health of Adult Fall Chinook Salmon." Journal of Fish and Wildlife Management 7(2):347-358.  doi:10.3996/102015-JFWM-108
  • Li H, C Tian, J Lu, MJ Myjak, JJ Martinez, RS Brown, and Z Deng. 2016. "An Energy Harvesting Underwater Acoustic Transmitter for Aquatic Animals." Scientific Reports 6:33804.  doi:10.1038/srep33804
  • Linley TJ, EJ Krogstad, MK Nims, and RB Langshaw. 2016. "Geochemical signatures in fin rays provide a nonlethal method to distinguish the natal rearing streams of endangered juvenile Chinook Salmon Oncorhynchus tshawytscha in the Wenatchee River, Washington." Fisheries Research 181:234-246.  doi:10.1016/j.fishres.2016.04.004
  • Linley TJ, EJ Krogstad, RP Mueller, GA Gill, and BK Lasorsa. 2016. "Mercury concentrations in Pacific lamprey (Entosphenus tridentatus) and sediments in the Columbia River Basin." Environmental Toxicology and Chemistry 35(10):2571-2576.  doi:10.1002/etc.3423
  • Liss SA, RS Brown, KA Deters, RW Walker, Z Deng, MB Eppard, RL Townsend, and A Seaburg. 2016. "Mortality, retention, growth, and wound healing in juvenile salmon injected with micro acoustic transmitters." Transactions of the American Fisheries Society 145(5):1047-1058.  doi:10.1080/00028487.2016.1176955
  • Lu J, Z Deng, H Li, MJ Myjak, JJ Martinez, J Xiao, RS Brown, and SS Cartmell. 2016. "A SMALL LONG-LIFE ACOUSTIC TRANSMITTER FOR STUDYING THE BEHAVIOR OF AQUATIC ANIMALS." Review of Scientific Instruments 87(11):114902.  doi:10.1063/1.4967941
  • Matzner S, AR Maxwell, KD Ham, RD Hytnen, and J Horne. 2016. "Observing Ocean Ecosystems with Sonar." In MTS/IEEE Oceans 2016, September 19-23, 2016, Monterey, California.  IEEE, PISCATAWAY, NJ.  doi:10.1109/OCEANS.2016.7761014
  • Skalski JR, MA Weiland, KD Ham, GR Ploskey, GA Mcmichael, AHA Colotelo, TJ Carlson, CM Woodley, MB Eppard, and EE Hockersmith. 2016. "Status After 5 Years of Survival Compliance Testing in the Federal Columbia River Power System (FCRPS)." North American Journal of Fisheries Management 36(4):720-730.  doi:10.1080/02755947.2016.1165775
  • Stegen JC, JK Fredrickson, MJ Wilkins, A Konopka, WC Nelson, EV Arntzen, WB Chrisler, RK Chu, RE Danczak, SJ Fansler, DW Kennedy, CT Resch, and MM Tfaily. 2016. "Groundwater-Surface Water Mixing Shifts Ecological Assembly Processes and Stimulates Organic Carbon Turnover." Nature Communications 7:11237.  doi:10.1038/ncomms11237
  • Walker RW, NK Ashton, RS Brown, SA Liss, AHA Colotelo, B Do Vale Beirao, RL Townsend, Z Deng, and MB Eppard. 2016. "Effects of a Novel Acoustic Transmitter on Swimming Performance and Predator Avoidance of Juvenile Chinook Salmon: Determination of a Size Threshold." Fisheries Research 176:48–54.  doi:10.1016/j.fishres.2015.12.007

2015

  • Brown RS, RW Walker, and JR Stephenson. 2015. A Preliminary Assessment of Barotrauma Injuries and Acclimation Studies for Three Fish SpeciesPNNL-24720, Pacific Northwest National Laboratory, Richland, WA. 
  • Matzner S, VI Cullinan, and CA Duberstein. 2015. "Two-dimensional thermal video analysis of offshore bird and bat flight." Ecological Informatics 30:20-28.  doi:10.1016/j.ecoinf.2015.09.001
  • Venteris ER, JD Tagestad, JL Downs, and CJ Murray. 2015. "Detection of Anomalous Crop Condition and Soil Variability Mappping Using a 26 Year Landsat Record and the Palmer Crop Moisture Index." International Journal of Applied Earth Observation and Geoinformation 39:160-170.  doi:10.1016/j.jag.2015.03.008
  • Bellgraph BJ, D Holecek, FA Goetz, JS Hughes, RA Harnish, JA Vazquez, and ED Green. 2015. Study Plan Alternatives to Evaluate Fish Entrainment at Albeni Falls DamPNNL-23950, Pacific Northwest National Laboratory, Richland, WA. 
  • Cullinan VI, S Matzner, and CA Duberstein. 2015. "Classification of Birds and Bats Using Flight Tracks." Journal of Field Ornithology 27:55-63.  doi:10.1016/j.ecoinf.2015.03.004
  • Deng Z, TJ Carlson, H Li, J Xiao, MJ Myjak, J Lu, JJ Martinez, CM Woodley, MA Weiland, and MB Eppard. 2015. "An injectable acoustic transmitter for juvenile salmon." Scientific Reports 5:8111.  doi:10.1038/srep08111
  • Do Vale Beirao B, N Castelo Branco Marciano, L de Souza Dias, R Carvalho Falco, E Wander Dias, D Leite Fabrino, C Barreira Martinez, LG Martins Da Silva, RW Walker, RS Brown, and Z Deng. 2015. "Barotrauma em peixes em usinas hidrelétricas: ferramentas para o estudo." Boletim Sociedade Brasileira de Ictiologia 115:26-36. 
  • Duncan JP, MR Sackschewsky, HT Tilden, II, J Su-Coker, JL Mendez, MY Ballinger, BG Fritz, GA Stoetzel, JM Barnett, KL Lowry, TW Moon, JM Becker, and MA Chamness. 2015. Pacific Northwest National Laboratory Annual Site Environmental Report for Calendar Year 2014PNNL-24668, Pacific Northwest National Laboratory, Richland, WA. 
  • Fowler KM, AHA Colotelo, JL Downs, KD Ham, JW Henderson, SA Montgomery, CR Vernon, and SA Parker. 2015. Simplified Processing Method for Meter Data AnalysisPNNL-24331, Pacific Northwest National Laboratory, Richland, WA. 
  • Harnish RA, AHA Colotelo, X Li, T Fu, KD Ham, Z Deng, and ED Green. 2015. Factors affecting route selection and survival of steelhead kelts at Snake River dams in 2012 and 2013PNNL-24207, Pacific Northwest National Laboratory, Richland, WA. 
  • Hejazi MI, N Voisin, L Liu, LM Bramer, DC Fortin, JE Hathaway, M Huang, GP Kyle, LYR Leung, H Li, Y Liu, PL Patel, TC Pulsipher, JS Rice, TK Tesfa, CR Vernon, and Y Zhou. 2015. "21st Century United States Emissions Mitigation Could Increase Water Stress more than the Climate Change it is Mitigating." Proceedings of the National Academy of Sciences of the United States of America 112(34):10635-10640.  doi:10.1073/pnas.1421675112
  • Jung KW, Z Deng, JJ Martinez, DR Geist, GA Mcmichael, JR Stephenson, and P Graf. 2015. "Performance of an Acoustic Telemetry System in a Large Fishway." Animal Biotelemetry 3:Article No. 17.  doi:10.1186/s40317-015-0052-9
  • Larson KB, JD Tagestad, CJ Perkins, MR Oster, WM Warwick, and SH Geerlofs. 2015. A Technical and Economic Optimization Approach to Exploring Offshore Renewable Energy Development in HawaiiPNNL-24639, Pacific Northwest National Laboratory, Richland, WA. 
  • Last GV, MMV Snyder, W Um, JR Stephenson, II Leavy, CE Strickland, DH Bacon, N Qafoku, and RJ Serne. 2015. Technetium, Iodine, and Chromium Adsorption/Desorption Kd Values for Vadose Zone Pore Water, ILAW Glass, and Cast Stone Leachates Contacting an IDF Sand Sequence PNNL-24683, Pacific Northwest National Laboratory, Richland, WA. 
  • Li X, Z Deng, JJ Martinez, T Fu, PS Titzler, JS Hughes, MA Weiland, RS Brown, BA Trumbo, ML Ahmann, and JF Renholods. 2015. "Three-Dimensional Tracking of Juvenile Salmon at Mid-Reach Location between Dams." Fisheries Research 167:216–224.  doi:10.1016/j.fishres.2015.01.018
  • Li X, Z Deng, RS Brown, T Fu, JJ Martinez, GA Mcmichael, JR Skalski, RL Townsend, BA Trumbo, ML Ahmann, and JF Renholods. 2015. "Migration Depth and Residence Time of Juvenile Salmonids in the Forebays of Hydropower Dams Prior to Passage through Turbines or Juvenile Bypass Systems: Implications for Turbine Passage Survival." Conservation Physiology 3(1):Article No. cou064.  doi:10.1093/conphys/cou064
  • Moser ML, AD Jackson, MC Lucas, and RP Mueller. 2015. "Behavior and potential threats to survival of migrating lamprey ammocoetes and macrophthalmia." Reviews in Fish Biology and Fisheries 25(2):103-116.  doi:10.1007/s11160-014-9372-8
  • Mueller RP, CL Rakowski, WA Perkins, and MC Richmond. 2015. Assessment of Fluctuating Reservoir Elevations Using Hydraulic Models and Impacts to Larval Pacific Lamprey Rearing Habitat in the Bonneville Pool PNNL-23876, Pacific Northwest National Laboratory, Richland, WA. 
  • Neeway JJ, N Qafoku, RJ Serne, AR Lawter, JR Stephenson, WW Lukens, and JH Westsik, Jr. 2015. Evaluation of Technetium Getters to Improve the Performance of Cast StonePNNL-23667 Rev. 1;EMSP-RPT-026 Rev1, Pacific Northwest National Laboratory, Richland, WA. 

2014

  • Brown RS, AHA Colotelo, BD Pflugrath, CA Boys, LJ Baumgartner, Z Deng, LG Silva, CJ Brauner, M Mallen-Cooper, O Phonekhampeng, G Thorncraft, and D Singhanouvong. 2014. "Understanding barotrauma in fish passing hydro structures: a global strategy for sustainable development of water resources." Fisheries 39(3):108-122.  doi:10.1080/03632415.2014.883570
  • Colotelo AHA, K Smokorowski, T Haxton, and SJ Cooke. 2014. "Comparative Evaluation of Four Presumptive Tests for Blood to Detect Epithelial Injury on Fish." Journal of Fish and Wildlife Management 5(1):26-34.  doi:10.3996/012012-JFWM-007
  • Cook KV, RS Brown, Z Deng, RS Klett, H Li, A Seaburg, and MB Eppard. 2014. "A comparison of implantation methods for large PIT tags or injectable acoustic transmitters in juvenile Chinook salmon." Fisheries Research 154: 213–223.  doi:10.1016/j.fishres.2013.11.006
  • Downs JL. 2014. "Sagebrush Ecosystems Under Fire." Douglasia 38(4) (Winter 2014):,
  • Amezcua-Martinez F, and BJ Bellgraph. 2014. Fisheries Management of Mexican and Central American Estuaries, vol. Estuaries of the World, ed. J-P Ducrotoy.  Springer Science+Business Media, Dordrecht, Netherlands. 
  • Baumgartner LJ, Z Deng, G Thorncraft, CA Boys, RS Brown, D Singhanouvong, and O Phonekhampeng. 2014. "Perspective: Towards environmentally acceptable criteria for downstream fish passage through mini hydro and irrigation infrastructure in the Lower Mekong River Basin." Journal of Renewable and Sustainable Energy 6(1):012301.  doi:10.1063/1.4867101
  • Bellgraph BJ, KM Carter, MA Chamness, TK Abel, TJ Linley, and VI Cullinan. 2014. "Predation Susceptibility of Juvenile Fall Chinook Salmon Exposed to Sudden Temperature Changes and Slightly Supersaturated Dissolved Gas." In Snake River Fall Chinook Salmon Life History Investigations, 1/1/2012 - 12/31/2012 Annual Report, vol. 2002-032-00, ed. KF Tiffan, et al, pp. 61-90.  Bonneville Power Administration , Pasco, WA. 
  • Choi EY, AE Flory, BL Lamarche, and MA Weiland. 2014. JSATS Detector Field ManualPNNL-22135, Pacific Northwest National Laboratory, Richland, WA. 
  • Colotelo AHA, RA Harnish, BW Jones, AC Hanson, DM Trott, MJ Greiner, GA McMichael, KD Ham, Z Deng, RS Brown, MA Weiland, X Li, and T Fu. 2014. Passage Distribution and Federal Columbia River Power System Survival for Steelhead Kelts Tagged Above and at Lower Granite Dam, Year 2PNNL-23051 FINAL, Pacific Northwest National Laboratory, Richland, WA. 
  • Colotelo AHA, RA Harnish, BW Jones, AC Hanson, DM Trott, MJ Greiner, GA Mcmichael, KD Ham, Z Deng, RS Brown, MA Weiland, X Li, and T Fu. 2014. Passage Distribution and Federal Columbia River Power System Survival for Steelhead Kelts Tagged Above and at Lower Granite Dam, Year 2PNNL-23051 Rev.1, Pacific Northwest National Laboratory, Richland, WA. 
  • Deng Z, B Southall, TJ Carlson, J Xu, JJ Martinez, MA Weiland, and JM Ingraham. 2014. "200 kHz Commercial Sonar Systems Generate Lower Frequency Side Lobes Audible to Some Marine Mammals." PLoS One 9(4):e95315.  doi:10.1371/journal.pone.0095315
  • Duncan JP, MR Sackschewsky, HT Tilden, II, JM Barnett, J Su-Coker, MY Ballinger, BG Fritz, GA Stoetzel, KL Lowry, TW Moon, JM Becker, KM Mendez, EA Raney, MA Chamness, and KB Larson. 2014. Pacific Northwest National Laboratory Annual Site Environmental Report for Calendar Year 2013PNNL-23523, Pacific Northwest National Laboratory, Richland, WA. 
  • Harnish RA, AHA Colotelo, X Li, KD Ham, and Z Deng. 2014. Factors Affecting Route Selection and Survival of Steelhead Kelts at Snake River Dams in 2012 and 2013PNNL-23941, Pacific Northwest National Laboratory, Richland, WA. 
  • Harnish RA, ED Green, CR Vernon, and GA Mcmichael. 2014. Ecological interactions between hatchery summer steelhead and wild Oncorhynchus mykiss in the Willamette River basin, 2014PNNL-23891, Pacific Northwest National Laboratory, Richland, WA. 
  • Harnish RA, R Sharma, GA McMichael, RB Langshaw, and TN Pearsons. 2014. "Effect of hydroelectric dam operations on the freshwater productivity of a Columbia River fall Chinook salmon population." Canadian Journal of Fisheries and Aquatic Sciences 71(4):602-615.  doi:10.1139/cjfas-2013-0276
  • Hayes DB, BJ Bellgraph, BM Roth, DD Dauble, and RP Mueller. 2014. "Timing of Redd Construction by Fall Chinook Salmon in the Hanford Reach of the Columbia River." River Research and Applications 30(9):1110-1119.  doi:10.1002/rra.2719
  • Ingraham JM, Z Deng, JJ Martinez, BA Trumbo, RP Mueller, and MA Weiland. 2014. "Feasibility of Tracking Fish with Acoustic Transmitters in the Ice Harbor Dam Tailrace." Scientific Reports 4:Article Number 4090.  doi:10.1038/srep04090
  • Ingraham JM, Z Deng, X Li, T Fu, GA McMichael, and BA Trumbo. 2014. "A fast and accurate decoder for underwater acoustic telemetry." Review of Scientific Instruments 85(7):074903.  doi:10.1063/1.4891041
  • Richmond MC, JA Serkowski, LL Ebner, M Sick, RS Brown, and TJ Carlson. 2014. "Quantifying Barotrauma Risk to Juvenile Fish during Hydro-turbine Passage." Fisheries Research 154(2014):152-164.  doi:10.1016/j.fishres.2014.01.007
  • Rodriguez-Preciado JA, F Amezcua-Martinez, BJ Bellgraph, and J Madrid-Vera. 2014. "Feeding habits and trophic level of the Panama grunt Pomadasys panamensis, an important bycatch species from the shrimp trawl fishery in the Gulf of California." Scientific World Journal 2014:Article No. 864241.  doi:10.1155/2014/864241
  • Skalski JR, MB Eppard, GR Ploskey, MA Weiland, TJ Carlson, and RL Townsend. 2014. "Assessment of Subyearling Chinook Salmon Survival through the Federal Hydropower Projects in the Main-Stem Columbia River." North American Journal of Fisheries Management 34(4):741-752.  doi:10.1080/02755947.2014.910577
  • Trumbo BA, ML Ahmann, JF Renholods, RS Brown, AHA Colotelo, and Z Deng. 2014. "Improving hydroturbine pressures to enhance salmon passage survival and recovery." Reviews in Fish Biology and Fisheries 24(3):955-965.  doi:10.1007/s11160-013-9340-8
  • Vermeul VR, CE Strickland, PD Thorne, BN Bjornstad, RD Mackley, ME Kelley, EC Sullivan, MD Williams, JE Amonette, JL Downs, BG Fritz, JE Szecsody, A Bonneville, and TJ Gilmore. 2014. "FutureGen 2.0 Monitoring Program: An Overview of the Monitoring Approach and Technologies Selected for Implementation." Energy Procedia 63:4062-4070.  doi:10.1016/j.egypro.2014.11.438
  • Widder SH, MA Chamness, JM Petersen, BC Singer, RL Maddalena, and H Destaillats. 2014. Pilot Implementation of a Field Study Design to Evaluate the Impact of Source Control Measures on Indoor Air Quality in High Performance HomesPNNL-23789, Pacific Northwest National Laboratory, Richland, WA. 

2013

  • Colotelo AHA, GD Raby, CT Hasler, T Haxton, K Smokorowski, G Blouin-Demers, and SJ Cooke. 2013. "Northern pike bycatch in an inland commercial hoop net fishery: effects of water temperature and net tending frequency on injury, physiology, and survival." Fisheries Research 137:41-49.  doi:10.1016/j.fishres.2012.08.019
  • Duncan JP. 2013. Characterization of Fish Passage Conditions through the Fish Weir and Turbine Unit 1 at Foster Dam, Oregon, Using Sensor Fish, 2012PNNL-22236, Pacific Northwest National Laboratory, Richland, WA. 
  • Durham RE, and JM Becker. 2013. L-325 Sagebrush Habitat Mitigation Project: Final Compensation Area Monitoring ReportPNNL-22809, Pacific Northwest National Laboratory, Richland, WA. 
  • Khan F, IM Royer, GE Johnson, and SC Tackley. 2013. "Sluiceway Operations for Adult Steelhead Downstream Passage at The Dalles Dam, Columbia River, USA." North American Journal of Fisheries Management 33(5):1013-1023.  doi:10.1080/02755947.2013.793629
  • McMichael GA, AC O'Toole, RA Harnish, and DM Trott. 2013. "Juvenile salmonid migratory behavior at the mouth of the Columbia River and within the plume." Animal Biotelemetry 1:Article No. 14.  doi:10.1186/2050-3385-1-14
  • Woodley CM, ES Fischer, KA Wagner, MA Weiland, MB Eppard, and TJ Carlson. 2013. "COMPLIANCE STUDIES: WHAT ABOUT THE FISH?" In HydroVision International Conference, July 23-26, 2014, Denver, Colorado.  HydroVision International, Tulsa, OK. 
  • Arntzen EV, BL Miller, AC O'Toole, SE Niehus, and MC Richmond. 2013. Evaluating greenhouse gas emissions from hydropower complexes on large rivers in Eastern WashingtonPNNL-22297, Pacific Northwest National Laboratory, Richland, WA. 
  • Brown RS, EW Oldenburg, A Seaburg, KV Cook, JR Skalski, MB Eppard, and KA Deters. 2013. "Survival of Seaward-Migrating PIT and Acoustic-Tagged Juvenile Chinook Salmon in the Snake and Columbia Rivers: An Evaluation of Length-Specific Tagging Effects." Animal Biotelemetry 1:Article No. 8.  doi:10.1186/2050-3385-1-8
  • Brown RS, KA Deters, KV Cook, and MB Eppard. 2013. "A comparison of single-suture and double-suture incision closures in seaward-migrating juvenile Chinook salmon implanted with acoustic transmitters: implications for research in river basins containing hydropower structures." Animal Biotelemetry 1:Article No. 10.  doi:10.1186/2050-3385-1-10
  • Brown RS, KV Cook, BD Pflugrath, LL Rozeboom, RC Johnson, J McLellan, TJ Linley, Y Gao, LJ Baumgartner, FE Dowell, EA Miller, and TA White. 2013. "Vulnerability of larval and juvenile white sturgeon to barotrauma: can they handle the pressure?" Conservation Physiology 1(1):Article No. cot019.  doi:10.1093/conphys/cot019
  • Brown RS, Z Deng, KV Cook, BD Pflugrath, X Li, T Fu, JJ Martinez, H Li, BA Trumbo, ML Ahmann, and A Seaburg. 2013. "A field evaluation of an external and neutrally buoyant acoustic transmitter for juvenile salmon: implications for estimating hydroturbine passage survival." PLoS One 8(10):e77744.  doi:10.1371/journal.pone.0077744
  • Bryson AJ, CM Woodley, RK Karls, KD Hall, MA Weiland, Z Deng, TJ Carlson, and MB Eppard. 2013. "Comparison of 180-degree and 90-degree needle rotation to reduce wound size in PIT-injected juvenile Chinook salmon." Fisheries Research 143:201– 204.  doi:10.1016/j.fishres.2013.02.011
  • Cooke SJ, VM Nguyen, KJ Murchie, JD Thiem, MR Donaldson, SG Hinch, RS Brown, and A Fisk. 2013. "To tag or not to tag: animal welfare, conservation and stakeholder considerations in fish tracking studies that use electronic tags." Journal of International Wildlife Law & Policy 16(4):352-374.  doi:10.1080/13880292.2013.805075
  • Duncan JP, MY Ballinger, BG Fritz, HT Tilden, II, GA Stoetzel, JM Barnett, J Su-Coker, A Stegen, TW Moon, JM Becker, EA Raney, MA Chamness, and KM Mendez. 2013. Pacific Northwest National Laboratory Annual Site Environmental Report for Calendar Year 2012PNNL-22691, Pacific Northwest National Laboratory, Richland, WA. 
  • Flory AE, BL Lamarche, and MA Weiland. 2013. JSATS Decoder Software ManualPNNL-22134 ., Pacific Northwest National Laboratory, Richland, WA. 
  • Geist DR, TJ Linley, VI Cullinan, and Z Deng. 2013. "The effects of total dissolved gas on chum salmon fry survival, growth, gas bubble disease, and seawater tolerance ." North American Journal of Fisheries Management 33(1):200-215.  doi:10.1080/02755947.2012.750634
  • Greif R, K Steimle, RS Brown, and D Gessler. 2013. "Cost-Effective Passage Design for High-Head Hydro Facilities." Hydro Review Sept. 2013:18-32. 
  • Hughes JS, GE Johnson, GR Ploskey, MJ Hennen, ES Fischer, and SA Zimmerman. 2013. Optimization of Hydroacoustic Equipment Deployment at Foster Dam, 2013PNNL-22359, Pacific Northwest National Laboratory, Richland, WA. 
  • Hughes JS, MA Weiland, CM Woodley, GR Ploskey, SM Carpenter, MJ Hennen, ES Fischer, G Batton, TJ Carlson, AW Cushing, Z Deng, DJ Etherington, T Fu, MJ Greiner, JM Ingraham, JA Kim, X Li, JJ Martinez, TD Mitchell, B Rayamajhi, A Seaburg, JR Skalski, RL Townsend, KA Wagner, and SA Zimmerman. 2013. Survival and Passage of Yearling and Subyearling Chinook Salmon and Juvenile Steelhead at McNary Dam, 2012PNNL-22788 FINAL, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, F Khan, JR Skalski, and BA Klatte. 2013. "Sluiceway Operations to Pass Juvenile Salmonids at The Dalles Dam, Columbia River, USA." North American Journal of Fisheries Management 33(5):1000-1012.  doi:10.1080/02755947.2013.822441
  • Ploskey GR, G Batten, AW Cushing, JA Kim, GE Johnson, JR Skalski, RL Townsend, A Seaburg, MA Weiland, CM Woodley, JS Hughes, TJ Carlson, SM Carpenter, Z Deng, DJ Etherington, ES Fischer, T Fu, MJ Greiner, MJ Hennen, JJ Martinez, TD Mitchell, B Rayamajhi, and SA Zimmerman. 2013. Survival and Passage of Juvenile Chinook Salmon and Steelhead Passing through Bonneville Dam, 2011. PNNL-22178 Final, Pacific Northwest National Laboratory, Richland, WA. 
  • Rayamajhi B, GR Ploskey, CM Woodley, MA Weiland, DM Faber, JA Kim, AHA Colotelo, Z Deng, and T Fu. 2013. Route-Specific Passage and Survival of Steelhead Kelts at The Dalles and Bonneville Dams, 2012 - Final ReportPNNL-22461 Rev. 1, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, GR Ploskey, MA Weiland, JS Hughes, CM Woodley, Z Deng, and TJ Carlson. 2013. Compliance Monitoring of Subyearling Chinook Salmon Smolt Survival and Passage at Bonneville Dam, Summer 2012PNNL-22188, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, GR Ploskey, MA Weiland, JS Hughes, CM Woodley, Z Deng, TJ Carlson, and GE Johnson. 2013. Compliance Monitoring of Subyearling Chinook Salmon Survival and Passage at The Dalles Dam, Summer 2012PNNL-22195, Pacific Northwest National Laboratory, Richland, WA. 
  • Skalski JR, RL Townsend, A Seaburg, MA Weiland, CM Woodley, JS Hughes, GR Ploskey, Z Deng, and TJ Carlson. 2013. Compliance Monitoring of Yearling and Subyearling Chinook Salmon and Juvenile Steelhead Survival and Passage at John Day Dam, 2012PNNL-22152 , Pacific Northwest National Laboratory, Richland, WA. 
  • Thorncraft G, LJ Baumgartner, CA Boys, and RS Brown. 2013. "Merging hydraulics with biology." International Water Power & Dam Construction 65(1):42-43. 
  • Vernon CR, EV Arntzen, MC Richmond, RA McManamay, TP Hanrahan, and CL Rakowski. 2013. GIS Framework for Large River Geomorphic Classification to Aid in the Evaluation of Flow-Ecology RelationshipsPNNL-22296, Pacific Northwest National Laboratory, Richland, WA. 
  • Walker RW, RS Brown, KA Deters, MB Eppard, and SJ Cooke. 2013. "Does UV disinfection compromise sutures? An evaluation of tissue response and suture retention in salmon surgically implanted with transmitters." Fisheries Research 147:32-35.  doi:10.1016/j.fishres.2013.04.010
  • Walker RW, LM Markillie, AHA Colotelo, DR Geist, ME Gay, CM Woodley, MB Eppard, and RS Brown. 2013. "Ultraviolet radiation as disinfection for fish surgical tools." Animal Biotelemetry 1:Article No. 4.  doi:10.1186/2050-3385-1-4
  • Walker RW, LM Markillie, AHA Colotelo, ME Gay, CM Woodley, and RS Brown. 2013. The Efficacy of Ultraviolet Radiation for Sterilizing Tools Used for Surgically Implanting Transmitters into Fish PNNL-21126, Pacific Northwest National Laboratory, Richland, WA. 
  • Weiland MA, CM Woodley, GR Ploskey, JS Hughes, JA Kim, Z Deng, T Fu, ES Fischer, JR Skalski, RL Townsend, JP Duncan, MJ Hennen, KA Wagner, EV Arntzen, BL Miller, AL Miracle, SA Zimmerman, IM Royer, F Khan, AW Cushing, DJ Etherington, TD Mitchell, T Elder, G Batton, GE Johnson, and TJ Carlson. 2013. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam, 2010PNNL-22177, Pacific Northwest National Laboratory, Richland, WA. 
  • Weiland MA, CM Woodley, GR Ploskey, JS Hughes, MJ Hennen, JA Kim, Z Deng, T Fu, JR Skalski, RL Townsend, KA Wagner, ES Fischer, JP Duncan, G Batten, TJ Carlson, SM Carpenter, AW Cushing, T Elder, DJ Etherington, GE Johnson, F Khan, AL Miracle, TD Mitchell, K Prather, B Rayamajhi, I Royer, A Seaburg, and SA Zimmerman. 2013. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam, 2011PNNL-22266, Pacific Northwest National Laboratory, Richland, WA. 

2012

2011

2010

2009

2008

2007

2006

  • Brown RS, DR Geist, and MG Mesa. 2006. "Use of Electromyogram Telemetry to Assess Swimmng Activity of Adult Spring Chinook Salmon Migrating Past a Columbia River Dam." Transactions of the American Fisheries Society 135(2):281-287.  doi:10.1577/T05-223.1
  • Brown RS, DR Geist, KA Deters, and MA Grassel. 2006. "Effects of surgically implanted acoustic transmitters >2% of body mass on the swimming performance, survival, and growth of juvenile sockeye and Chinook salmon." Journal of Fish Biology 69(6):1626-1638.  doi:10.1111/j.1095-8649.2006.01227.x
  • Deng Z, MC Richmond, and TJ Carlson. 2006. Characterization of The Dalles Dam Spillbay 6 Vortex Using Surface Entrained Sensor Fish Device: Preliminary Report PNNL-15883, Pacific Northwest National Laboratory, Richland, WA. 
  • Fritz BG, F Khan, and DP Mendoza. 2006. "Evaluation of airflow patterns following procedures established by NUREG-1400." Health Physics. Operational Radiation Safety 91(8):S18-S23. 
  • Geist DR, CS Abernethy, KD Hand, VI Cullinan, JA Chandler, and P Groves. 2006. "Survival, development, and growth of fall Chinook salmon embryos, alevin, and fry exposed to variable thermal and dissolved oxygen regimes." Transactions of the American Fisheries Society 135(6):1462-1477. 
  • Geist DR, CS Abernethy, KD Hand, VI Cullinan, JA Chandler, and P Groves. 2006. "Survival, development, and growth of Snake River fall Chinook salmon Embryos, Alevins, and Fry Exposed to Variable Thermal and Dissolved Oxygen Regimes." Transactions of the American Fisheries Society 135(6):1462-1477.  doi:10.1577/T05-294.1
  • McGrath KE, E Dawley, and DR Geist. 2006. Total Dissolved Gas Effects on Fishes of the Lower Columbia RiverPNNL-15525, Pacific Northwest National Laboratory, Richland, WA. 
  • Miracle AL, G Ankley, and D Lattier. 2006. "Expression of two vitellogenin genes (vg1 and vg3) in fathead minnow (Pimephales promelas) liver in response to exposure to steroidal estrogens and androgens." Ecotoxicology and Environmental Safety 63(3):337-342. 
  • Ploskey GR, MA Weiland, SA Zimmerman, JS Hughes, KE Bouchard, ES Fischer, CR Schilt, ME Hanks, J Kim, JR Skalski, J Hedgepeth, and WT Nagy. 2006. Hydroacoustic Evaluation of Fish Passage Through Bonneville Dam in 2005PNNL-15944, Pacific Northwest National Laboratory, Richland, WA. 
  • Arntzen EV, DR Geist, and PE Dresel. 2006. "Effects of Fluctuating River flow on Groundwater/Surface Water Mixing in the Hyporheic Zone of a Regulated, Large Cobble Bed River ." River Research and Applications 22(8):937-946.  doi:10.1002/rra.947
  • Cook CB, B Dibrani, JA Serkowski, MC Richmond, PS Titzler, and GW Dennis. 2006. Acoustic Doppler Current Profiler Measurements in the Tailrace at John Day DamPNNL-15627, Pacific Northwest National Laboratory, Richland, WA. 
  • Cook CB, B Dibrani, MC Richmond, MD Bleich, PS Titzler, and T Fu. 2006. Hydraulic Characteristics of the Lower Snake River During Periods of Juvenile Fall Chinook MigrationPNNL-15532, Pacific Northwest National Laboratory, Richland, WA. 
  • Dauble DD, RA Moursund, and MD Bleich. 2006. "Swimming behaviour of juvenile Pacific lamprey, Lampetra tridentata." Environmental Biology of Fishes 75(2):167-171.  doi:10.1007/s10641-005-4698-7
  • Horton DG, and MA Chamness. 2006. Borehole Data Package for RCRA Well 299-W22-47 at Single-Shell Tank Waste Management Area S-SX, Hanford Site, WashingtonPNNL-15775, Pacific Northwest National Laboratory, Richland, WA. 
  • Horton DG, and MA Chamness. 2006. Borehole Data Package for Two RCRA Wells 299-W11-25B and 299-W11-46 at Single-Shell Tank Waste Management Area T, Hanford Site, WashingtonPNNL-15776, Pacific Northwest National Laboratory, Richland, WA. 
  • Johnson GE, F Khan, J Hedgepeth, RP Mueller, CL Rakowski, MC Richmond, JA Serkowski, and JR Skalski. 2006. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Sluiceway, 2005PNNL-15540, Pacific Northwest National Laboratory, Richland, WA. 
  • Mueller RP, RS Brown, HH Hop, and L Moulton. 2006. "Video and acoustic camera techniques for studying fish under ice: a review and comparison." Reviews in Fish Biology and Fisheries 16(2):213-226.  doi:10.1007/s11160-006-9011-0
  • Mueller RP, RS Brown, HH Hop, and L Moulton. 2006. "Video and acoustic camera techniques for studying fish under ice: a review and comparison." Reviews in Fish Biology and Fisheries 16(2):213-226. 
  • Mueller RP, RA Moursund, and MD Bleich. 2006. "Tagging Juvenile Pacific Lamprey with Passive Integrated Transponders: Methodology, Short-Term Mortality, and Influence on Swimming Performance." North American Journal of Fisheries Management 26(2):361-366.  doi:10.1577/M05-017.1
  • Mueller RP, RA Moursund, and MD Bleich. 2006. "Tagging Juvenile Pacific Lamprey with Passive Integrated Transponders: Methodology, Short-Term Mortality, and Influence on Swimming Performance." North American Journal of Fisheries Management 26:361-366.  doi:10.1577/M05-017.1
  • Ploskey GR, GE Johnson, MA Weiland, F Khan, RP Mueller, JA Serkowski, CL Rakowski, J Hedgepeth, JR Skalski, BD Ebberts, and BA Klatte. 2006. "Acoustic Camera Evaluation of Juvenile Salmonid Approach and Fate at Surface Flow Outlets of Two Hydropower Dams ." In HydroVision 2006, p. 13 pages.  HCI Publications, Kansas City, MO. 

2005

2004

2003

2002

2001

2000

  • Geist DR, CS Abernethy, SL Blanton, and VI Cullinan. 2000. "The use of electromyogram telemetry to estimate energy expenditure of adult fall chinook salmon." Transactions of the American Fisheries Society 129(1):126-135. 
  • Geist DR, J Jones, CJ Murray, and DD Dauble. 2000. "Suitability criteria analyzed at the spatial scale of redd clusters improved estimates of fall chinook salmon (Oncorhynchus tshawytscha) spawning habitat use in the Hanford Reach, Columbia River." Canadian Journal of Fisheries and Aquatic Sciences 57(8):1636-1646. 
  • Geist DR. 2000. "Hyporheic discharge of river water into fall chinook salmon (Oncorhynchus tshawytscha) spawning areas in the Hanford Reach, Columbia River." Canadian Journal of Fisheries and Aquatic Sciences 57(8):1647-1656. 
  • Geist DR. 2000. "The interaction of ground water and surface water within fall chinook salmon spawning areas in the Hanford Reach of the Columbia River." In Proceedings of the Ground-Water/Surface-Water Interactions Workshop, vol. EPA/542/R-00/007, pp. 95-98.  US Environmental Protection Agency, Washington, DC. 
  • Johnson GE, NS Adams, RL Johnson, DW Rondorf, DD Dauble, and TY Barila. 2000. "Evaluation of the Prototype Surface Bypass for Salmonid Smolts in Spring 1996 and 1997 at Lower Granite Dam on the Snake River, Washington." Transactions of the American Fisheries Society 129(2):381-397. 
  • Tiller BL, RK Zufelt, SD Turner, LL Cadwell, L Bender, and GK Turner. 2000. Population Characteristics and Seasonal Movement Patterns of the Rattlesnake Hills Elk Herd - Status Report 2000PNNL-13331, Pacific Northwest National Laboratory, Richland, WA. 
  • Dauble DD, and DR Geist. 2000. "Comparison of Mainstem Spawning Habitats for Two Populations of Fall Chinook Salmon in the Columbia River Basin." Regulated Rivers, Research & Management 16(4):345-361. 
  • Dauble DD, and RP Mueller. 2000. "Difficulties in estimating survival for adult chinook salmon in the Columbia and Snake rivers." Fisheries 25(8):24-34. 
  • Johnson RL, and GE Johnson. 2000. "Fish Behavior Relative to a Prototype Surface Bypass and Collector (SBC) at Lower Granite Dam Using Innovative Hydroacoustic Techniques." In Advances in Fish Passage Technology, ed. Mufeed Odeh, pp. 57-67.  American Fisheries Society, Bethesda, MD. 
  • Johnson RL, and RA Moursund. 2000. "Evaluation of Juvenile Salmon Behavior at Bonneville Dam, Columbia River, Using a Multibeam Technique ." Aquatic Living Resources 13(5):313-318. 
  • Neitzel DA, EJ Antonio, CJ Fosmire, RA Fowler, CS Glantz, SM Goodwin, DW Harvey, PL Hendrickson, DG Horton, TM Poston, AC Rohay, PD Thorne, and MK Wright. 2000. Hanford Site National Environmental Policy Act (NEPA) CharacterizationPNNL-6415 Rev. 12, Pacific Northwest National Laboratory, Richland, WA. 

1999

1998

  • Downs JL, and RA Black. 1998. "Leaf surface characteristics and gas exchange in Artemisia tridentata subspecies wyomingensis and tridentata ." In Proceedings, Shrubland Ecotones , pp. 108-112.  US Department of Agriculture, Forest Service Rocky Mountain Forest & Range Experimental Station, Fort Collins, CO. 
  • Garrott R, JG Cook, MM Bernoco, JF Kirpatrick, LL Cadwell, S Cherry, and BL Tiller. 1998. "Antibody Response of Elk Immunized with Porcine Zona Pellucida." Journal of Wildlife Diseases 34(3):539-546. 
  • Johnson RL, DS Daly, and GE Johnson. 1998. "Combining Hydroacoustics, Flow Models to Study Fish Behavior." Hydro Review XVII(7):40-56. 

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