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Energy and Environment Directorate

Publications

Coastal Ecosystem Research Group

204 publications found:

2018

  • Wunschel D.S., B.R. Valenzuela, B. Kaiser, K.D. Victry, and D.L. Woodruff. 2018. "Method development for comprehensive extraction and analysis of marine toxins: Liquid-liquid extraction and tandem liquid chromatography separations coupled to electrospray tandem mass spectrometry." Talanta 187. PNNL-SA-131966. doi:10.1016/j.talanta.2018.05.019

2016

  • Copping A.E., S.A. Breithaupt, J.M. Whiting, M.E. Grear, J.D. Tagestad, and G.A. Shelton. 2016. "Likelihood of a Marine Vessel Accident from Wind Energy Development in the Atlantic." Wind Energy 19, no. 9:1557-1566. PNNL-SA-108588. doi:10.1002/we.1935
  • Deng Z., T.J. Carlson, G.R. Ploskey, R.S. Brown, G.E. Johnson, and A.H. Colotelo. 2016. "Experimental and numerical modeling tools for conventional hydropower systems." In Alternative Energy and Shale Gas Encyclopedia, edited by JH Lehr, J Keeley and TB Kingery. 448-464. Hoboken, New Jersey:John Wiley & Sons, Inc. PNNL-SA-90973. doi:10.1002/9781119066354.ch44
  • Diefenderfer H.L., G.E. Johnson, R.M. Thom, K.E. Buenau, L.A. Weitkamp, C.M. Woodley, and A.B. Borde, et al. 2016. "Evidence-based Evaluation of the Cumulative Effects of Ecosystem Restoration." Ecosphere 7, no. 3:e01242. PNNL-SA-104585. doi:10.1002/ecs2.1242
  • Xuan J., Z. Yang, D. Huang, T. Wang, and F. Zhou. 2016. "Tidal residual current and its role in the mean flow on the Changjiang Bank." Journal of Marine Systems 154, no. Part A:66-81. PNNL-SA-109787. doi:10.1016/j.jmarsys.2015.04.005

2015

  • Buenau K.E. 2015. Modeling to Support the Development of Habitat Targets for Piping Plovers on the Missouri River. PNNL-24287. Richland, WA: Pacific Northwest National Laboratory.
  • Coleman A.M., H.L. Diefenderfer, D.L. Ward, and A.B. Borde. 2015. "A Spatially Based Area–Time Inundation Index Model Developed to Assess Habitat Opportunity in Tidal–Fluvial Wetlands and Restoration Sites." Ecological Engineering 82. PNNL-SA-98413. doi:10.1016/j.ecoleng.2015.05.006
  • Copping A.E., L.A. Hanna, F.B. Van Cleve, K.M. Blake, and R.M. Anderson. 2015. "Environmental Risk Evaluation System – An Approach to Ranking Risk of Ocean Energy Development on Coastal and Estuarine Environments." Estuaries and Coasts 38, no. 1:S287-S302. PNNL-SA-102166. doi:10.1007/s12237-014-9816-3
  • Diefenderfer H.L. 2015. "Coastal Conservation." Marine Biology Research 11, no. 4:446-448. PNNL-SA-107702. doi:10.1080/17451000.2014.999095
  • Estes M.G., M. Al-Hamdan, J. Ellis, C.R. Judd, D.L. Woodruff, R.M. Thom, and D. Quattrochi, et al. 2015. "A Modeling System to Assess Land Cover Land Use Change Effects on SAV habitat in the Mobile Bay Estuary." Journal of the American Water Resources Association 51, no. 2:513-536. PNWD-SA-10349. doi:10.1111/jawr.12263
  • Jay D.A., K. Leffler, H.L. Diefenderfer, and A.B. Borde. 2015. "Tidal-Fluvial and Estuarine Processes in the Lower Columbia River: I. Along-channel Water Level Variations, Pacific Ocean to Bonneville Dam." Estuaries and Coasts 38, no. 2:415-433. PNNL-SA-98787. doi:10.1007/s12237-014-9819-0
  • Johnson G.E., G.R. Ploskey, N.K. Sather, and D.J. Teel. 2015. "Residence Times of Juvenile Salmon and Steelhead in Off-Channel Tidal Freshwater Habitats, Columbia River, USA." Canadian Journal of Fisheries and Aquatic Sciences 72, no. 5:684-696. PNNL-SA-101024. doi:10.1139/cjfas-2014-0085
  • Thom R.M., and A.B. Borde. 2015. "ESTUARINE HABITAT RESTORATION." In Encyclopedia of Estuaries, edited by MJ Kennish. 273-285. Amsterdam:Springer. PNNL-SA-98175. doi:10.1007/978-94-017-8801-4_78
  • Wang T., and Z. Yang. 2015. "Understanding the Flushing Capability of Bellingham Bay and Its Implication on Bottom Water Hypoxia." Estuarine, Coastal and Shelf Science 165. PNNL-SA-109990. doi:10.1016/j.ecss.2015.04.010
  • Wang T., Z. Yang, and A.E. Copping. 2015. "A Modeling Study of the Potential Water Quality Impacts from In-Stream Tidal Energy Extraction." Estuaries and Coasts 38, no. 1 (Supplement):173-186. PNNL-SA-97921. doi:10.1007/s12237-013-9718-9
  • Yang Z., and T. Wang. 2015. "Modeling the Effects of Tidal Energy Extraction on Estuarine Hydrodynamics in a Stratified Estuary." Estuaries and Coasts 38, no. 1 Supplement:187-202. PNNL-SA-97325. doi:10.1007/s12237-013-9684-2
  • Yang Z., T. Wang, N. Voisin, and A.E. Copping. 2015. "Estuarine Response to River Flow and Sea-Level Rise under Future Climate Change and Human Development." Estuarine, Coastal and Shelf Science 156. PNNL-SA-102982. doi:10.1016/j.ecss.2014.08.015

2014

  • Buenau K.E., T.L. Hiller, and A.J. Tyre. 2014. "Modeling the effects of river flow on population dynamics of piping plovers (Charadrius melodus) and least terns (Sternula antillarum) nesting on the Missouri River." River Research and Applications 30, no. 8:964-975. PNNL-SA-91812. doi:10.1002/rra.2694
  • Copping A.E., S.H. Geerlofs, and L.A. Hanna. 2014. The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Wave Energy Devices. PNNL-23412. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E. 2014. Facilitation of the Estuary/Ocean Subgroup and the Expert Regional Technical Group, Fiscal Year 2014 Annual Report. PNNL-23603. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., N.K. Sather, J.R. Skalski, and D. Teel. 2014. "Application of Diversity Indices to Quantify Early Life-History Diversity for Chinook Salmon." Ecological Indicators 38. PNNL-SA-93739. doi:10.1016/j.ecolind.2013.11.005
  • Li Y., J. Yi, H. Song, Q. Wang, Z. Yang, N.D. Kelley, and K. Lee. 2014. "On the Natural Frequency of Tidal Current Power Systems - A Discussion of Sea Testing." Applied Physics Letters 105, no. 2:Article No. 023902. PNNL-SA-100413. doi:10.1063/1.4886797
  • Thom R.M., S.L. Southard, and A.B. Borde. 2014. "Climate-linked mechanisms driving spatial and temporal variation in eelgrass (Zostera marina L.) growth and assemblage structure in Pacific Northwest estuaries, USA." Journal of Coastal Research. JCR Fall 2014, no. 68:1-11. PNNL-SA-102122. doi:10.2112/SI68-001.1
  • Wang T., T. Khangaonkar, W. Long, and G.A. Gill. 2014. "Development of a Kelp-type Structure Module in a Coastal Ocean Model to Assess the Hydrodynamic Impact of Seawater Uranium Extraction Technology." Journal of Marine Science and Engineering 2, no. 1:81-92. PNNL-SA-100036. doi:10.3390/jmse2010081
  • Yang Z., and T. Wang. 2014. "Hydrodynamic Modeling Analysis to Support Nearshore Restoration Projects in a Changing Climate." Journal of Marine Science and Engineering 2, no. 1:18-32. PNWD-SA-10261. doi:10.3390/jmse2010018
  • Yang Z., T. Wang, A. Copping, and S.H. Geerlofs. 2014. "Modeling In-stream Tidal Energy Extraction and Its Potential Environmental Impacts." In Proceedings of the 10th European Wave and Tidal Energy Conference, 2013, n/a. London:European Wave and Tidal Energy Conference. PNNL-SA-98054.
  • Yang Z., T. Wang, A.E. Copping, and S.H. Geerlofs. 2014. "Modeling of In-stream Tidal Energy Development and its Potential Effects in Tacoma Narrows, Washington, USA." Ocean and Coastal Management 99. PNNL-SA-100989. doi:10.1016/j.ocecoaman.2014.02.010
  • Yang Z., T. Wang, and A. Copping. 2014. "ARRAY OPTIMIZATION FOR TIDAL ENERGY EXTRACTION IN A TIDAL CHANNEL – A NUMERICAL MODELING ANALYSIS." In Proceedings of the 2nd Marine Energy Technology Symposium (METS2014), April 15-28, 2014, Seattle, Washington. Gaithersburg, Maryland:Ocean Renewable Energy Coalition. PNNL-SA-102213.

2013

  • Bryson A.J., C.M. Woodley, R.K. Karls, K.D. Hall, M.A. Weiland, Z. Deng, and T.J. Carlson, et al. 2013. "Comparison of 180-degree and 90-degree needle rotation to reduce wound size in PIT-injected juvenile Chinook salmon." Fisheries Research 143. PNNL-SA-91825. doi:10.1016/j.fishres.2013.02.011
  • Coleman A.M., G.E. Johnson, A.B. Borde, H.L. Diefenderfer, N.K. Sather, T.E. Seiple, and J.A. Serkowski. 2013. The Oncor Geodatabase for the Columbia Estuary Ecosystem Restoration Program: Annual Report, 2012. PNNL-22405. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., S.H. Geerlofs, and L.A. Hanna. 2013. The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Ocean Current Devices - Reference Model #4. PNNL-22753. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., S.H. Geerlofs, and L.A. Hanna. 2013. The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Oscillating Water Column Wave Energy Devices. PNNL-22723. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., Z. Yang, N. Voisin, J. Richey, T. Wang, R.Y. Taira, and M. Constans, et al. 2013. Integrated Modeling and Decision-Support System for Water Management in the Puget Sound Basin: Snow Caps to White Caps. PNNL-23078. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., A.B. Borde, and V.I. Cullinan. 2013. A Synthesis of Environmental and Plant Community Data for Tidal Wetland Restoration Planning in the Lower Columbia River and Estuary. PNNL-22667. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., G.E. Johnson, R.M. Thom, A.B. Borde, C.M. Woodley, L.A. Weitkamp, and K.E. Buenau, et al. 2013. An Evidence-Based Evaluation of the Cumulative Effects of Tidal Freshwater and Estuarine Ecosystem Restoration on Endangered Juvenile Salmon in the Columbia River: Final Report. PNNL-23037. Richland, WA: Pacific Northwest National Laboratory.
  • Hanna L.A., J.M. Whiting, and A.E. Copping. 2013. Visual Modeling for Aqua Ventus I off Monhegan Island, ME. PNNL-22982. Richland, WA: Pacific Northwest National Laboratory.
  • Hanna L.A., R.S. Butner, J.M. Whiting, and A.E. Copping. 2013. Tethys and Annex IV Progress Report for FY 2012. PNNL-21865 Tethys. Richland, WA: Pacific Northwest National Laboratory.
  • Hughes J.S., G.E. Johnson, G.R. Ploskey, M.J. Hennen, E.S. Fischer, and S.A. Zimmerman. 2013. Optimization of Hydroacoustic Equipment Deployment at Foster Dam, 2013. PNNL-22359. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., and N.K. Sather. 2013. Facilitation of the Estuary/Ocean Subgroup and the Expert Regional Technical Group, Fiscal Year 2013 Annual Report. PNNL-22757. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., F. Khan, J.R. Skalski, and B.A. Klatte. 2013. "Sluiceway Operations to Pass Juvenile Salmonids at The Dalles Dam, Columbia River, USA." North American Journal of Fisheries Management 33, no. 5:1000-1012. PNNL-SA-87100. doi:10.1080/02755947.2013.822441
  • Johnson G.E., N.K. Sather, A. Storch, J. Johnson, J.R. Skalski, D.J. Teel, and T. Brewer, et al. 2013. Multi-Scale Action Effectiveness Research in the Lower Columbia River and Estuary, 2012. PNNL-22481. Richland, WA: Pacific Northwest National Laboratory.
  • Ke Y., A.M. Coleman, and H.L. Diefenderfer. 2013. "Temporal Land Cover Analysis for Net Ecosystem Improvement." Ecohydrology & Hydrobiology 13, no. 1:84-96. PNNL-SA-93740.
  • Khan F., I.M. Royer, G.E. Johnson, and S.C. Tackley. 2013. "Sluiceway Operations for Adult Steelhead Downstream Passage at The Dalles Dam, Columbia River, USA." North American Journal of Fisheries Management 33, no. 5:1013-1023. PNNL-SA-87099. doi:10.1080/02755947.2013.793629
  • Khangaonkar T., and T. Wang. 2013. "Potential alteration of fjordal circulation due to a large floating structure—Numerical investigation with application to Hood Canal basin in Puget Sound." Applied Ocean Research 39. PNNL-SA-71339. doi:10.1016/j.apor.2012.11.003
  • Ploskey G.R., G. Batten, A.W. Cushing, J.A. Kim, G.E. Johnson, J.R. Skalski, and R.L. Townsend, et al. 2013. Survival and Passage of Juvenile Chinook Salmon and Steelhead Passing through Bonneville Dam, 2011. PNNL-22178 Final. Richland, WA: Pacific Northwest National Laboratory.
  • Sather N.K., A.B. Borde, H.L. Diefenderfer, J.A. Serkowski, A.M. Coleman, and G.E. Johnson. 2013. The Oncor Geodatabase for the Columbia Estuary Ecosystem Restoration Program: Handbook of Data Reduction Procedures, Workbooks, and Exchange Templates. PNNL-22922. Richland, WA: Pacific Northwest National Laboratory.
  • Schultz I.R., A.D. Skillman, S.T. Sloan-Evans, and D.L. Woodruff. 2013. "Domoic acid toxicokinetics in Dungeness crabs: New insights into mechanisms that regulate bioaccumulation." Aquatic Toxicology 140-141, no. 2013:77-88. PNWD-SA-10059. doi:10.1016/j.aquatox.2013.04.011
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.R. Ploskey, M.A. Weiland, J.S. Hughes, and C.M. Woodley, et al. 2013. Compliance Monitoring of Subyearling Chinook Salmon Survival and Passage at The Dalles Dam, Summer 2012. PNNL-22195. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., C.M. Woodley, G.R. Ploskey, J.S. Hughes, J.A. Kim, Z. Deng, and T. Fu, et al. 2013. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam, 2010. PNNL-22177. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., C.M. Woodley, G.R. Ploskey, J.S. Hughes, M.J. Hennen, J.A. Kim, and Z. Deng, et al. 2013. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam, 2011. PNNL-22266. Richland, WA: Pacific Northwest National Laboratory.
  • Whiting J.M., L.A. Hanna, N.L. DeChello, and A.E. Copping. 2013. Acoustic Modeling for Aqua Ventus I off Monhegan Island, ME. PNNL-22926. Richland, WA: Pacific Northwest National Laboratory.
  • Woodley C.M., K.A. Wagner, A.J. Bryson, and M.B. Eppard. 2013. "Performance assessment of bi-directional knotless tissue-closure devices in juvenile Chinook salmon surgically implanted with acoustic transmitters." Animal Biotelemetry 1. PNNL-SA-91945. doi:10.1186/2050-3385-1-9
  • Woodruff D.L., V.I. Cullinan, A.E. Copping, and K.E. Marshall. 2013. Effects of Electromagnetic Fields on Fish and Invertebrates Task 2.1.3: Effects on Aquatic Organisms Fiscal Year 2012 Progress Report Environmental Effects of Marine and Hydrokinetic Energy. PNNL-22154. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T. Wang. 2013. "Tidal Residual Eddies and their Effect on Water Exchange in Puget Sound." Ocean Dynamics 63, no. 8:995-1009. PNNL-SA-95667. doi:10.1007/s10236-013-0635-z
  • Yang Z., T. Wang, and A.E. Copping. 2013. "Modeling Tidal Stream Energy Extraction and its Effects on Transport Processes in a Tidal Channel and Bay System Using a Three-dimensional Coastal Ocean Model." Renewable Energy 50. PNNL-SA-88183. doi:10.1016/j.renene.2012.07.024
  • Yang Z., T. Wang, L.R. Leung, K.A. Hibbard, A.C. Janetos, I.P. Kraucunas, and J.S. Rice, et al. 2013. "A modeling study of coastal inundation induced by storm surge, sea-level rise, and subsidence in the Gulf of Mexico." Natural Hazards 71, no. 3:1771-1794. PNNL-SA-94696. doi:10.1007/s11069-013-0974-6

2012

  • Anderson M.G., C. Judd, and K. Marcoe. 2012. "Rapid Characterization of Shorelines using a Georeferenced Video Mapping System." Journal of Coastal Research. JCR 28, no. 5:1289-1296. PNNL-SA-76014. doi:10.2112/JCOASTRES-D-10-00186.1
  • Borde A.B., R.M. Kaufmann, V.I. Cullinan, S.A. Zimmerman, R.M. Thom, and C.L. Wright. 2012. Lower Columbia River and Estuary Habitat Monitoring Study, 2011 - Final Report. PNNL-21128. Richland, WA: Pacific Northwest National Laboratory.
  • Borde A.B., V.I. Cullinan, H.L. Diefenderfer, R.M. Thom, R.M. Kaufmann, S.A. Zimmerman, and J. Sagar, et al. 2012. Lower Columbia River and Estuary Ecosystem Restoration Program Reference Site Study: 2011 Restoration Analysis - FINAL REPORT. PNNL-21433. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., K.M. Blake, L.A. Hanna, C.A. Brandt, J.A. Ward, J.M. Brandenberger, and G.A. Gill, et al. 2012. Evaluating Effects of Stressors from Marine and Hydrokinetic Energy. PNNL-21885. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., L.A. Hanna, R.S. Butner, T.J. Carlson, M.B. Halvorsen, C.A. Duberstein, and S. Matzner, et al. 2012. Environmental Effects of Offshore Wind Development. Fiscal Year 2012 Progress Report. PNNL-21852. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., G.E. Johnson, J.R. Skalski, S.A. Breithaupt, and A.M. Coleman. 2012. "Application of the Diminishing Returns Concept in the Hydroecologic Restoration of Riverscapes." Landscape Ecology 27, no. 5:671-682. PNNL-SA-66973. doi:10.1007/s10980-012-9713-8
  • Geerlofs S.H., L.A. Hanna, C.R. Judd, and K.M. Blake. 2012. Regulatory Assistance, Stakeholder Outreach, and Coastal and Marine Spatial Planning Activities In Support Marine and Hydrokinetic Energy Deployment: Task 2.1.7 Permitting and Planning Fiscal Year 2012 Year-End Report. PNNL-21876. Richland, WA: Pacific Northwest National Laboratory.
  • Harnish R.A., G.E. Johnson, G.A. McMichael, M.S. Hughes, and B.D. Ebberts. 2012. "Effect of Migration Pathway on Travel Time and Survival of Acoustic-Tagged Juvenile Salmonids in the Columbia River Estuary." Transactions of the American Fisheries Society 141, no. 2:507-519. PNNL-SA-70629. doi:10.1080/00028487.2012.670576
  • Johnson G.E., and W.S. Rainey. 2012. "Eco-Design of River Fishways for Upstream Passage: Application for Hanfeng Dam, Pengxi River, China." Journal of Chongqing Normal University - Natural Science Edition 29, no. 3:104-113. PNNL-SA-85479.
  • Johnson G.E., H.L. Diefenderfer, R.M. Thom, G.C. Roegner, B.D. Ebberts, J.R. Skalski, and A.B. Borde, et al. 2012. Evaluation of Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2010. PNNL-20296. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., M.J. Hennen, S.A. Zimmerman, G. Batten, S.M. Carpenter, Z. Deng, and T. Fu, et al. 2012. Survival and Passage of Yearling Chinook Salmon and Steelhead at The Dalles Dam, Spring 2011 - FINAL REPORT. PNNL-21826. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., W.H. Pearson, S.L. Southard, and R.P. Mueller. 2012. "Upstream Movement of Juvenile Coho Salmon in Relation to Environmental Conditions in a Culvert Test Bed." Transactions of the American Fisheries Society 141, no. 6:1520-1531. PNWD-SA-8455. doi:10.1080/00028487.2012.699013
  • Khan F., G.E. Johnson, I.M. Royer, J.S. Hughes, E.S. Fischer, D.M. Trott, and G.R. Ploskey. 2012. Hydroacoustic Evaluation of Juvenile Salmonid Passage and Distribution at Lookout Point Dam, 2010. PNNL-20362 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Khan F., G.E. Johnson, I.M. Royer, N.R. Phillips, J.S. Hughes, E.S. Fischer, and K.D. Ham, et al. 2012. Acoustic Imaging Evaluation of Juvenile Salmonid Behavior in the Immediate Forebay of the Water Temperature Control Tower at Cougar Dam, 2010. PNNL-20625 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Khan F., I.M. Royer, G.E. Johnson, and K.D. Ham. 2012. Hydroacoustic Evaluation of Juvenile Salmonid Passage and Distribution at Detroit Dam, 2011. PNNL-21577 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T., B.S. Sackmann, W. Long, T. Mohamedali, and M. Roberts. 2012. "Simulation of annual biogeochemical cycles of nutrient balance, phytoplankton bloom(s), and DO in Puget Sound using an unstructured grid model." Ocean Dynamics 62, no. 9:1353-1379. PNNL-SA-89087. doi:10.1007/s10236-012-0562-4
  • Khangaonkar T., B.S. Sackmann, W. Long, T. Mohamedali, and M. Roberts. 2012. Puget Sound Dissolved Oxygen Modeling Study: Development of an Intermediate Scale Water Quality Model. PNNL-20384 Rev 1. Richland, WA: Pacific Northwest National Laboratory.
  • Sather N.K., A. Storch, G.E. Johnson, D.J. Teel, J.R. Skalski, A.J. Bryson, and R.M. Kaufmann, et al. 2012. Multi-Scale Action Effectiveness Research in the Lower Columbia River and Estuary, 2011 - FINAL ANNUAL REPORT. PNNL-21194 FINAL. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.E. Johnson, G.R. Ploskey, and T.J. Carlson. 2012. Compliance Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at The Dales Dam, Spring 2011. PNNL-21124. Richland, WA: Pacific Northwest National Laboratory.
  • Skalski J.R., R.L. Townsend, A. Seaburg, G.E. Johnson, G.R. Ploskey, and T.J. Carlson. 2012. Compliance Monitoring of Juvenile Yearling Chinook Salmon and Steelhead Survival and Passage at The Dalles Dam, Spring 2011. PNNL-21124 Rev 1. Richland, WA: Pacific Northwest National Laboratory.
  • Thom R.M., H.L. Diefenderfer, J. Vavrinec, and A.B. Borde. 2012. "Restoring Resiliency: Case Studies from Pacific Northwest Estuarine Eelgrass (Zostera marina L.) Ecosystems." Estuaries and Coasts 35, no. 1:78-91. PNNL-SA-68902. doi:10.1007/s12237-011-9430-6
  • Vavrinec J., A.B. Borde, D.L. Woodruff, J.M. Brandenberger, R.M. Thom, C.L. Wright, and V.I. Cullinan. 2012. Annual Adaptive Management Report for Compensatory Mitigation at Keyport Lagoon: Mitigation of Pier B Development at the Bremerton Naval Facilities - Compensatory Mitigation at Keyport Lagoon - Naval Underwater Warfare Center Division - Keyport, Washington. PNNL-21147 Draft. Richland, WA: Pacific Northwest National Laboratory.
  • Wang T., and Z. Yang. 2012. "A Modeling Study of Hydrodynamic Circulation in a Fjord of the Pacific Northwest." In Proceedings of the 12th International Conference on Estuarine and Coastal Modeling, November 7-9, 2011, St. Augustine, Florida, 256-273. Reston, Virginia:American Society of Civil Engineering. PNNL-SA-86494.
  • Woodley C.M., A.J. Bryson, S.M. Carpenter, K.M. Knox, M.E. Gay, and K.A. Wagner. 2012. Performance Assessment of Bi-Directional Knotless Tissue-Closure Device in Juvenile Chinook Salmon Surgically Implanted with Acoustic Transmitters, 2010 - Final Report. PNNL-21699. Richland, WA: Pacific Northwest National Laboratory.
  • Woodley C.M., K.A. Wagner, and A.J. Bryson. 2012. Performance Assessment of Bi-Directional Knotless Tissue-Closure Devices in Juvenile Chinook Salmon Surgically Implanted with Acoustic Transmitters, 2009 - Final Report. PNNL-21986. Richland, WA: Pacific Northwest National Laboratory.
  • Woodruff D.L., I.R. Schultz, K.E. Marshall, J.A. Ward, and V.I. Cullinan. 2012. Effects of Electromagnetic Fields on Fish and Invertebrates: Task 2.1.3: Effects on Aquatic Organisms - Fiscal Year 2011 Progress Report - Environmental Effects of Marine and Hydrokinetic Energy. PNNL-20813 Final. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T. Wang. 2012. "Hydrodynamic Modeling Analysis of Tidal Wetland Restoration in Snohomish River, Washington." In Proceedings of the 12th International Conference on Estuarine and Coastal Modeling, November 7-9, 2011, St Augustine, Florida, edited by ML Spaulding, 139-155. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-84170. doi:10.1061/9780784412411.00008
  • Yang Z., T. Wang, T. Khangaonkar, and S.A. Breithaupt. 2012. "Integrated Modeling of Flood Flows and Tidal Hydrodynamics over a Coastal Floodplain." Environmental Fluid Mechanics 12, no. 1:63-80. PNWD-SA-9428. doi:10.1007/s10652-011-9214-3

2011

  • Breithaupt S.A., and T. Khangaonkar. 2011. "Effects of Wetland Restoration on Floodplain Hydrodynamics under Extreme Flooding Conditions." Ecological Restoration 29, no. 1-2:161-172. PNWD-SA-9752. doi:10.3368/er.29.1-2.161
  • Carlson T.J., G.E. Johnson, C.M. Woodley, J.R. Skalski, and A. Seaburg. 2011. Compliance Monitoring of Underwater Blasting for Rock Removal at Warrior Point, Columbia River Channel Improvement Project, 2009/2010. PNNL-20388. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., and L.A. Hanna. 2011. Screening Analysis for the Environmental Risk Evaluation System Fiscal Year 2011 Report Environmental Effects of Offshore Wind Energy. PNNL-20962. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., and S.H. Geerlofs. 2011. "The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Marine and Hydrokinetic Devices." In Proceedings of the 9th European Wave and Tidal Energy Conference, September 5-9, 2011, Southampton, United Kingdom. Southampton:EWTEC. PNNL-SA-79512.
  • Diefenderfer H.L., G.E. Johnson, N.K. Sather, J.R. Skalski, E.M. Dawley, A.M. Coleman, and K.G. Ostrand, et al. 2011. Evaluation of Life History Diversity, Habitat Connectivity, and Survival Benefits Associated with Habitat Restoration Actions in the Lower Columbia River and Estuary, Annual Report 2010. PNNL-20295 Final. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., R.M. Thom, G.E. Johnson, J.R. Skalski, K.A. Vogt, B.D. Ebberts, and G.C. Roegner, et al. 2011. "A Levels-of-Evidence Approach for Assessing Cumulative Ecosystem Response to Estuary and River Restoration Programs." Ecological Restoration 29, no. 1-2:111-132. PNNL-SA-55734.
  • Geerlofs S.H., A.E. Copping, F.B. Van Cleve, K.M. Blake, and L.A. Hanna. 2011. Regulatory Assistance, Stakeholder Outreach, and Coastal and Marine Spatial Planning Activities in Support of Marine and Hydrokinetic Energy Deployment. PNNL-20778. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., A. Storch, J.R. Skalski, A.J. Bryson, C. Mallette, A.B. Borde, and E. Van Dyke, et al. 2011. Ecology of Juvenile Salmon in Shallow Tidal Freshwater Habitats of the Lower Columbia River, 2007–2010. PNNL-20083. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., J.R. Skalski, T.J. Carlson, G.R. Ploskey, M.A. Weiland, Z. Deng, and E.S. Fischer, et al. 2011. Survival and Passage of Yearling and Subyearling Chinook Salmon and Steelhead at The Dalles Dam, 2010. PNNL-20626. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T., and Z. Yang. 2011. "A High Resolution Hydrodynamic Model of Puget Sound to Support Nearshore Restoration Feasibility Analysis and Design." Ecological Restoration 29, no. 1-2:173-184. PNNL-SA-70081. doi:10.3368/er.29.1-2.173
  • Khangaonkar T., Z. Yang, T. Kim, and M. Roberts. 2011. "Tidally averaged circulation in Puget Sound sub-basins: Comparison of historical data, analytical model, and numerical model." Estuarine, Coastal and Shelf Science 93, no. 4:305-319. PNNL-SA-80338. doi:10.1016/j.ecss.2011.04.016
  • Prasad R., L.F. Hibler, A.M. Coleman, and D.L. Ward. 2011. Design-Basis Flood Estimation for Site Characterization at Nuclear Power Plants in the United States of America. PNNL-20091; NUREG/CR-7046. Richland, WA: Pacific Northwest National Laboratory.
  • Roesijadi G., A.M. Coleman, C. Judd, F.B. Van Cleve, R.M. Thom, K.E. Buenau, and J.D. Tagestad, et al. 2011. Macroalgae Analysis A National GIS-based Analysis of Macroalgae Production Potential Summary Report and Project Plan. PNNL-21087. Richland, WA: Pacific Northwest National Laboratory.
  • Thom R.M., E. Haas, N.R. Evans, and G.D. Williams. 2011. "Lower Columbia River and Estuary Habitat Restoration Prioritization Framework." Ecological Restoration 29, no. 1-2:94-110. PNWD-SA-9159.
  • Thom R.M., H.L. Diefenderfer, J.E. Adkins, C. Judd, M.G. Anderson, K.E. Buenau, and A.B. Borde, et al. 2011. "Guidelines, processes and tools for coastal ecosystem restoration, with examples from the United States." Plankton & Benthos Research 5, no. Supplement:185-201. PNNL-SA-73076. doi:10.3800/pbr.5.185
  • Weiland M.A., G.R. Ploskey, J.S. Hughes, Z. Deng, T. Fu, J.A. Kim, and G.E. Johnson, et al. 2011. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival Proportions at John Day Dam, 2009. PNNL-20766. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T. Wang. 2011. Assessment of Tidal Energy Removal Impacts on Physical Systems: Development of MHK Module and Analysis of Effects on Hydrodynamics. PNNL-20804. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., T. Khangaonkar, and T. Wang. 2011. "Use of Advanced Meteorological Model Output for Coastal Ocean Modeling in Puget Sound." International Journal of Ocean and Climate Systems 2, no. 2:101-117. PNNL-SA-80241.

2010

  • Anderson R.M., A.E. Copping, and F.B. Van Cleve. 2010. Environmental Risk Evaluation System (ERES) for Offshore Wind - Mock-Up of ERES, Fiscal Year 2010 Progress Report. PNNL-20020. Richland, WA: Pacific Northwest National Laboratory.
  • Anderson R.M., A.E. Copping, and F.B. Van Cleve. 2010. Preliminary Screening Analysis for the Environmental Risk Evaluation System: Task 2.1.1: Evaluating Effects of Stressors – Fiscal Year 2010 Progress Report: Environmental Effects of Marine and Hydrokinetic Energy. PNNL-19990. Richland, WA: Pacific Northwest National Laboratory.
  • Anderson R.M., A.E. Copping, F.B. Van Cleve, S.D. Unwin, and E.L. Hamilton. 2010. Conceptual Model of Offshore Wind Environmental Risk Evaluation System. PNNL-19500. Richland, WA: Pacific Northwest National Laboratory.
  • Anderson R.M., S.D. Unwin, and F.B. Van Cleve. 2010. Identification and Prioritization of Analysis Cases for Marine and Hydrokinetic Energy Risk Screening. PNNL-19535. Richland, WA: Pacific Northwest National Laboratory.
  • Carlson T.J., and G.E. Johnson. 2010. Columbia River Channel Improvement Project Rock Removal Blasting: Monitoring Plan. PNNL-19076. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., and S.H. Geerlofs. 2010. Marine and Hydrokinetic Energy Development Technical Support and General Environmental Studies Report on Outreach to Stakeholders for Fiscal Year 2009. PNNL-19081. Richland, WA: Pacific Northwest National Laboratory.
  • Copping A.E., R.M. Anderson, and F.B. Van Cleve. 2010. "Applying Risk Science and Stakeholder Engagement to Overcome Environmental Barriers to Marine and Hydrokinetic Energy Projects." In Oceans 2010: MTS/IEEE Conference Proceedings, September 20-23, 2010, Seattle, WA. Piscataway, New Jersey:IEEE. PNNL-SA-74526. doi:10.1109/OCEANS.2010.5664492
  • Deng Z., R.P. Mueller, M.C. Richmond, and G.E. Johnson. 2010. "Injury and mortality of juvenile salmon entrained in a submerged jet entering still water." North American Journal of Fisheries Management 30, no. 3:623-628. PNNL-SA-63135.
  • Diefenderfer H.L., G.E. Johnson, N.K. Sather, J.R. Skalski, E.M. Dawley, and A.M. Coleman. 2010. Evaluation of Life History Diversity, Habitat Connectivity, and Survival Benefits Associated with Habitat Restoration Actions in the Lower Columbia River and Estuary, Annual Report 2009. PNNL-19410. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E. 2010. Facilitation of the Estuary/Ocean Subgroup for Federal Research, Monitoring, and Evaluation, FY10 Annual Report. PNNL-19940. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., F. Khan, G.R. Ploskey, J.S. Hughes, and E.S. Fischer. 2010. Optimization of Hydroacoustic Equipment Deployments at Lookout Point and Cougar Dams, Willamette Valley Project, 2010. PNNL-19293. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., H.L. Diefenderfer, A.B. Borde, A.J. Bryson, A. Cameron, A.M. Coleman, and C. Corbett, et al. 2010. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2009. PNNL-19440. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., T.J. Carlson, and J.R. Skalski. 2010. Compliance Monitoring of Juvenile Subyearling Chinook Salmon Survival and Passage at The Dalles Dam, Summer 2010. PNNL-20042. Richland, WA: Pacific Northwest National Laboratory.
  • Khan F., G.E. Johnson, and M.A. Weiland. 2010. Hydroacoustic Evaluation of Overwintering Summer Steelhead Fallback and Kelt Passage at The Dalles Dam, 2009-2010. PNNL-19615. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T., Z. Yang, S.H. Geerlofs, and A. Copping. 2010. "Overland Tidal Power Generation Using Modular Tidal Prism." In Estuarine and Coastal Modeling: Proceedings of the 11th International Conference, November 4-6, 2009, Seattle, WA, edited by ML Spaulding, 466-477. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-71118. doi:10.1061/41121(388)28
  • Kim T., R.G. Labiosa, T. Khangaonkar, Z. Yang, C. Chen, J. Qi, and C. Cerco. 2010. "Development and evaluation of a coupled hydrodynamic (FVCOM) and water quality model (CE-QUAL-ICM)." In Proceedings of the 11th International Conference on Estuarine and Coastal Modeling, November 4-6, 2009, Seattle, Washington, edited by ML Spaulding, 373-388. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-69320. doi:10.1061/41121(388)23
  • Schultz I.R., D.L. Woodruff, K.E. Marshall, W.J. Pratt, and G. Roesijadi. 2010. Effects of Electromagnetic Fields on Fish and Invertebrates. PNNL-19883. Richland, WA: Pacific Northwest National Laboratory.
  • Skaggs R., S.A. Breithaupt, S.R. Waichler, T. Kim, and D.L. Ward. 2010. Analysis of Flood Hazards for the Materials and Fuels Complex at the Idaho National Laboratory Site. PNNL-20029. Richland, WA: Pacific Northwest National Laboratory.
  • Van Cleve F.B., and A.E. Copping. 2010. Offshore Wind Energy Permitting: A Survey of U.S. Project Developers. PNNL-20024. Richland, WA: Pacific Northwest National Laboratory.
  • Van Cleve F.B., and J.C. States. 2010. Assessment of the National Wind Coordinating Collaborative: Addressing Environmental and Siting Issues Associated with Wind Energy Development. PNNL-19971. Richland, WA: Pacific Northwest National Laboratory.
  • Wang T., Z. Yang, and T. Khangaonkar. 2010. Development of a Hydrodynamic and Transport model of Bellingham Bay in Support of Nearshore Habitat Restoration. PNNL-19347. Richland, WA: Pacific Northwest National Laboratory.
  • Ward J.A., I.R. Schultz, D.L. Woodruff, G. Roesijadi, and A.E. Copping. 2010. "Assessing the Effects of Marine and Hydrokinetic Energy Development on Marine and Estuarine Resources." In OCEANS 2010, September 20-23, 2010, Seattle, WA. Piscataway, New Jersey:IEEE. PNNL-SA-74186. doi:10.1109/OCEANS.2010.5664064
  • Woodruff D.L., C. Judd, R.M. Thom, N.K. Sather, and R.M. Kaufmann. 2010. Fifth Annual Report: 2008 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation. PNNL-15678-5. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T. Khangaonkar. 2010. "Multi-scale modeling of Puget Sound using an unstructured-grid coastal ocean model: from tide flats to estuaries and coastal waters." Ocean Dynamics 60, no. 6:1621-1637. PNNL-SA-77035. doi:10.1007/s10236-010-0348-5
  • Yang Z., and T. Wang. 2010. Hydrodynamic Modeling Analysis of Union Slough Restoration Project in Snohomish River, Washington. PNNL-20076. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., K.L. Sobocinski, D.W. Heatwole, T. Khangaonkar, R.M. Thom, and R. Fuller. 2010. "Hydrodynamic and Ecological Assessment of Nearshore Restoration: A Modeling Study." Ecological Modelling 221, no. 7:1043-1053. PNNL-SA-61739. doi:10.1016/j.ecolmodel.2009.07.011
  • Yang Z., T. Khangaonkar, and T. Wang. 2010. Assessment of Energy Removal Impacts on Physical Systems: Hydrodynamic Model Domain Expansion and Refinement, and Online Dissemination of Model Results. PNNL-19882. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., T. Khangaonkar, M. Calvi, and K. Nelson. 2010. "Simulation of Cumulative Effects of Nearshore Restoration Projects on Estuarine Hydrodynamics." Ecological Modelling 221, no. 7:969-977. PNWD-SA-8277. doi:10.1016/j.ecolmodel.2008.12.006
  • Yang Z., T. Khangaonkar, R.G. Labiosa, and T. Kim. 2010. Puget Sound Dissolved Oxygen Modeling Study: Development of an Intermediate-Scale Hydrodynamic Model. PNNL-18484. Richland, WA: Pacific Northwest National Laboratory.

2009

  • Arntzen E.V., D.R. Geist, K.J. Murray, J. Vavrinec, E.M. Dawley, and D.E. Schwartz. 2009. "Influence of the Hyporheic Zone on Supersaturated Gas Exposure to Incubating Chum Salmon." North American Journal of Fisheries Management 29, no. 6:1714-1727. PNNL-SA-62788. doi:10.1577/M08-212.1
  • Arntzen E.V., K.D. Hand, K.M. Carter, D.R. Geist, K.J. Murray, E.M. Dawley, and V.I. Cullinan, et al. 2009. Total Dissolved Gas Effects on Incubating Chum Salmon Below Bonneville Dam. PNNL-18081. Richland, WA: Pacific Northwest National Laboratory.
  • Diefenderfer H.L., K.L. Sobocinski, R.M. Thom, C.W. May, A.B. Borde, S.L. Southard, and J. Vavrinec, et al. 2009. "Multiscale Analysis of Restoration Priorities for Marine Shoreline Planning." Environmental Management 44, no. 4:712-731. PNWD-SA-8063. doi:10.1007/s00267-009-9298-4
  • Estes M.G., M. Al-Hamdan, R.M. Thom, D. Quattrochi, D.L. Woodruff, C. Judd, and J. Ellis, et al. 2009. "Watershed and Hydrodynamic Modeling for Evaluating the Impact of Land Use Change on Submerged Aquatic Vegetation and Seagrasses in Mobile Bay." In OCEANS 2009: MTS/IEEE Biloxi - Marine Tehcnology for Our Future: Global and Local Challenges. Piscataway, New Jersey:IEEE. PNWD-SA-8733.
  • Johnson G.E. 2009. Facilitation of the Estuary/Ocean Subgroup for Federal Research, Monitoring, and Evaluation, FY09 Annual Report. PNNL-18907. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., H.L. Diefenderfer, A.B. Borde, E.M. Dawley, B.D. Ebberts, G.C. Roegner, and M.T. Russell, et al. 2009. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2008. PNNL-18677. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., M.C. Richmond, J.B. Hedgepeth, G.R. Ploskey, M.G. Anderson, Z. Deng, and F. Khan, et al. 2009. Smolt Responses to Hydrodynamic Conditions in Forebay Flow Nets of Surface Flow Outlets, 2007. PNNL-17387. Richland, WA: Pacific Northwest National Laboratory.
  • Judd C., K.S. Judd, T.C. Gulbransen, and R.M. Thom. 2009. Summary of Training Workshop on the Use of NASA tools for Coastal Resource Management in the Gulf of Mexico. PNNL-18326. Richland, WA: Pacific Northwest National Laboratory.
  • Khan F., G.E. Johnson, and M.A. Weiland. 2009. Hydroacoustic Evaluation of Overwintering Summer Steelhead Fallback and Kelt Passage at The Dalles Dam 2008-2009. PNNL-18590. Richland, WA: Pacific Northwest National Laboratory.
  • Ploskey G.R., M.A. Weiland, D.M. Faber, Z. Deng, G.E. Johnson, J.S. Hughes, and S.A. Zimmerman, et al. 2009. Survival Rates of Juvenile Salmonids Passing Through the Bonneville Dam and Spillway in 2008. PNNL-18748. Richland, WA: Pacific Northwest National Laboratory.
  • Sather N.K., G.E. Johnson, A. Storch, D. Teel, J.R. Skalski, T.A. Jones, and E.M. Dawley, et al. 2009. Ecology of Juvenile Salmon in Shallow Tidal Freshwater Habitats in the Vicinity of the Sandy River Delta, Lower Columbia River, 2008. PNNL-18450. Richland, WA: Pacific Northwest National Laboratory.
  • Thom R.M., M.G. Anderson, D. Tyre, and C.A. Fleming. 2009. Adaptive Management for Decision Making at the Program and Project Levels of the Missouri River Recovery Program. PNNL-18261. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., G.R. Ploskey, J.S. Hughes, Z. Deng, T. Fu, T.J. Monter, and G.E. Johnson, et al. 2009. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John Day Dam with Emphasis on the Prototype Surface Flow Outlet, 2008. PNNL-18890. Richland, WA: Pacific Northwest National Laboratory.
  • Weiland M.A., J. Kim, W.T. Nagy, and G.E. Johnson. 2009. Evaluation of Steelhead Kelt Passage into the Bonneville Dam Second Powerhouse Corner Collector Prior to the Juvenile Migration Seasons, 2007 and 2008. PNNL-18323. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T.P. Khangaonkar. 2009. "Modeling Tidal Circulation and Stratification in Skagit River Estuary Using an Unstructured Grid Ocean Model." Ocean Modelling 28, no. 1-3:34-49. (special issue). PNWD-SA-8278.
  • Yang Z., T. Khangaonkar, J.M. Chase, and T. Wang. 2009. "Puget Sound Operational Forecast System - A Real-time Predictive Tool for Marine Resource Management and Emergency Responses." In Proceedings of the 11th International Conference on Estuarine and Coastal Modeling, November 4-6, 2009, Seattle, WA, edited by ML Spaulding, 356-372. Reston, Virginia:American Society of Civil Engineers (ASCE). PNNL-SA-71183. doi:10.1061/41121(388)22

2008

  • Diefenderfer H.L., A.M. Coleman, A.B. Borde, and I.A. Sinks. 2008. "Hydraulic Geometry and Microtopography of Tidal Freshwater Forested Wetlands and Implications for Restoration, Columbia River, U.S.A." International Journal of Ecohydrology & Hydrobiology 8, no. 2-4:339-361. PNNL-SA-59093. doi:10.2478/v10104-009-0027-7
  • Diefenderfer H.L., and D.R. Montgomery. 2008. "Pool spacing, channel morphology, and the restoration of tidal forested wetlands of the Columbia River, U.S.A." Restoration Ecology 17, no. 1:158-168. PNNL-SA-55592. doi:10.1111/j.1526-100X.2008.00449.x
  • Hibler L.F., A.R. Maxwell, L.M. Miller, N.P. Kohn, D.L. Woodruff, M. Montes, and M.A. Moline. 2008. "Improved fine-scale transport model performance using AUV and HSI feedback in a tidally dominated system." Journal of Geophysical Research. C. (Oceans) 113. PNNL-SA-58167. doi:10.1029/2008JC004739
  • Johnson G.E., and G.B. Sutherland. 2008. Proceedings of the Columbia River Estuary Conference on Ecosystem Restoration. Richland, Washington:Battelle Press. PNNL-SA-61338.
  • Johnson G.E., and H.L. Diefenderfer. 2008. Facilitation of the Estuary/Ocean Subgroup for Federal Research, Monitoring, and Evaluation, FY08 Annual Report. PNNL-17811. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., B.D. Ebberts, A.E. Giorgi, K. Kuhn, R.T. Lee, J.H. Plump, and D.A. Stensby, et al. 2008. "Outfall Site and Type Selection for a New Surface Flow Outlet to Pass Juvenile Salmonids at Bonneville Dam's Second Powerhouse, Columbia River." In Advances in Fisheries Bioengineering: 4th Fisheries Bioengineering Symposium, Bethesda, Maryland, edited by SV Amaral, D Mathur, EP Taft, 203-216. Bethesda, Maryland:American Fisheries Society. PNNL-SA-53930.
  • Johnson G.E., G.R. Ploskey, J. Hedgepeth, F. Khan, R.P. Mueller, W.T. Nagy, and M.C. Richmond, et al. 2008. "Reducing the Impacts of Hydroelectric Dams on Juvenile Anadromous Fishes: Bioengineering Evaluations Using Acoustic Imaging in the Columbia River, USA." In Dams: Impacts, Stability and Design, edited by WP Hayes & MC Barnes. 1-48. Hauppauge, New York:Nova Science Publishers. PNNL-SA-61525.
  • Johnson G.E., H.L. Diefenderfer, A.B. Borde, E.M. Dawley, B.D. Ebberts, D.A. Putman, and G.C. Roegner, et al. 2008. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2007. PNNL-17437. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., H.L. Diefenderfer, B.D. Ebberts, C. Tortorici, T. Yerxa, J. Leary, and J.R. Skalski. 2008. Research, Monitoring, and Evaluation for the Federal Columbia River Estuary Program. PNNL-17300. Richland, WA: Pacific Northwest National Laboratory.
  • Khangaonkar T.P., and Z. Yang. 2008. "DYNAMIC RESPONSE OF STREAM TEMPERATURES TO BOUNDARY AND INFLOW PERTURBATION DUE TO RESERVOIR OPERATIONS." River Research and Applications 24, no. 4:420-433. PNNL-SA-59954. doi:10.1002/rra.1088
  • Khangaonkar T.P., Z. Yang, J. Paik, and F. Sotiropoulos. 2008. "Simulation of Hydrodynamics at Stratified Reservoirs Using a Staged Modeling Approach." Journal of Coastal Research. JCR. PNNL-SA-57677.
  • Mueller R.P., S.S. Southard, C.W. May, W.H. Pearson, and V.I. Cullinan. 2008. "Juvenile Coho Salmon Leaping Ability and Behavior in an Experimental Culvert Test Bed." Transactions of the American Fisheries Society 137, no. 4:941-950. PNWD-SA-7768. doi:10.1577/T06-244.1
  • Ploskey G.R., J.S. Hughes, F. Khan, J. Kim, B.L. Lamarche, G.E. Johnson, and E.Y. Choi, et al. 2008. Optimization of Concurrent Deployments of the Juvenile Salmon Acoustic Telemetry System and Other Hydroacoustic Equipment at John Day Dam. PNNL-17837. Richland, WA: Pacific Northwest National Laboratory.
  • Roegner G.C., H.L. Diefenderfer, A.B. Borde, R.M. Thom, E.M. Dawley, A.H. Whiting, and S.A. Zimmerman, et al. 2008. Protocols for Monitoring Habitat Restoration Projects in the Lower Columbia River and Estuary. PNNL-15793. Richland, WA: Pacific Northwest National Laboratory.
  • Sobocinski K.L., G.E. Johnson, N.K. Sather, A. Storch, T.A. Jones, C. Mallette, and E.M. Dawley, et al. 2008. Ecology of Juvenile Salmonids in Shallow Tidal Freshwater Habitats in the Vicinity of the Sandy River Delta, Lower Columbia River, 2007. PNNL-17395. Richland, WA: Pacific Northwest National Laboratory.
  • Tagestad J.D., J. Bolte, M. Guzy, D.L. Woodruff, K. Humes, V. Walden, and M.S. Wigmosta, et al. 2008. PACIFIC NORTHWEST REGIONAL COLLABORATORY ANNUAL REPORT FOR SYNERGY VII (2007). PNNL-17271. Richland, WA: Pacific Northwest National Laboratory.
  • Thom R.M., S.L. Southard, A.B. Borde, and P. Stoltz. 2008. "Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries." Estuaries and Coasts 31, no. 5:969-980. PNWD-SA-6070. doi:10.1007/s12237-008-9082-3
  • Thom R.M., S.S. Southard, A.B. Borde, and P. Stoltz. 2008. "Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries." Estuaries and Coasts 31, no. 5:969-980. PNWD-SA-8093. doi:10.1007/s12237-008-9082-3
  • Yang Z., and T.P. Khangaonkar. 2008. "Modeling of Coastal Effluent Transport: an Approach to Linking of Far-field and Near-field Models." Acta Oceanologica Sinica 27. PNNL-SA-48553.
  • Yang Z., and T.P. Khangaonkar. 2008. "Modeling of Salt Intrusion, Intertidal Mixing, and Circulation in a Braided Estuary." In Surface Water Modeling, 52, 171-180. Boca Raton, Florida:Journal of Coastal Research. PNWD-SA-8011.

2007

  • Brandenberger J.M., C.W. May, V.I. Cullinan, R.K. Johnston, D.E. Leisle, B. Beckwith, and G. Sherrell, et al. 2007. "Contaminant Concentrations in Storm Water Entering the Sinclair/Dyes Inlet Subasin of the Puget Sound, USA, During Storm Event and Baseflow Conditions." In 2007 Georgia Basin Puget Sound Research Conference, Vancouver, British Columbia, March 26–29, 2007, 9 pages. Olympia, Washington:Puget Sound Action Team. PNNL-SA-55447.
  • Cullinan V.I., C.W. May, J.M. Brandenberger, C. Judd, and R.K. Johnston. 2007. "Development of An Empirical Water Quality Model for Stormwater Based on Watershed Land Use in Puget Sound." In 2007 Georgia Basin Puget Sound Research Conference, Vancouver, British Columbia, March 26–29, 2007, 8 pages. Olympia, Washington:Puget Sound Action Team. PNNL-SA-55324.
  • Duberstein C.A., K.D. Ham, D.D. Dauble, and G.E. Johnson. 2007. The Independent Technical Analysis Process. PNNL-16507. Richland, WA: Pacific Northwest National Laboratory.
  • Frick W.E., W.E. Frick, T.P. Khangaonkar, A.C. Sigleo, and Z. Yang. 2007. "Estuarine-ocean exchange in a North Pacific estuary: comparison of steady state and dynamic model." Estuarine, Coastal and Shelf Science 74, no. 1-2:1-11. PNNL-SA-49044. doi:10.1016/j.ecss.2007.02.019
  • Johnson G.E., A.B. Borde, E. Dawley, H.L. Diefenderfer, B.D. Ebberts, D.A. Putman, and G.C. Roegner, et al. 2007. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2006. PNNL-16561. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., and H.L. Diefenderfer. 2007. Facilitation of the Estuary/Ocean Subgroup for Research, Monitoring, and Evaluation, FY07 Annual Report. PNNL-16947. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., F. Khan, J.R. Skalski, C.L. Rakowski, M.C. Richmond, and J.A. Serkowski. 2007. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Spillway, 2006. PNNL-16458. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., J.W. Beeman, I. Duran, and A. Puls. 2007. Synthesis of Juvenile Salmonid Passage Studies at The Dalles Dam, Volume II, 2001-05. PNNL-16443. Richland, WA: Pacific Northwest National Laboratory.
  • Jones M.E., L.M. Miller, D.L. Woodruff, and D.W. Ewert. 2007. "Mapping of Submerged Aquatic Vegetation Using Autonomous Underwater Vehicles in Nearshore Regions." In Oceans 2007, 1450-1456. Piscataway, New Jersey:IEEE. PNNL-SA-56566. doi:10.1109/OCEANS.2007.4449331
  • Judd C., D.L. Woodruff, R.M. Thom, M.G. Anderson, and A.B. Borde. 2007. Restoration Prioritization Toolset: Documentation and User's Guides 2007. PNNL-17054. Richland, WA: Pacific Northwest National Laboratory.
  • Judd C., E.S. Stefansson, and H. Brushnahan. 2007. GoMRC Website ‘Meta-analysis Report: Land-use and submerged aquatic vegetation change in the Gulf of Mexico'. PNNL-17164. Richland, WA: Pacific Northwest National Laboratory.
  • Judd K.S., C. Judd, J.A. Engel-Cox, T. Gulbransen, M.G. Anderson, D.L. Woodruff, and R.M. Thom, et al. 2007. Gulf of Mexico Regional Collaborative Final Report. PNNL-17180. Richland, WA: Pacific Northwest National Laboratory.
  • Lee C., D.J. Schwab, D. Beletsky, D. Beletsky, J. Stroud, and B.M. Lesht. 2007. "Numerical modeling of mixed sediment resuspension, transport, and deposition during the March 1998 episodic events in southern Lake Michigan." Journal of Geophysical Research. C. (Oceans) 112, no. C2:C02018. PNNL-SA-52228. doi:10.1029/2005JC003419
  • Moline M.A., D.L. Woodruff, and N.R. Evans. 2007. "Optical Delineation of Benthic Habitat Using an Autonomous Underwater Vehicle." Journal of Field Robotics 24, no. 6:461-471. PNNL-SA-52129. doi:10.1002/rob.20176
  • Rensel J.E., D.A. Kiefer, J.R. Forster, D.L. Woodruff, and N.R. Evans. 2007. "Offshore finfish mariculture in the Strait of Juan de Fuca." Suisan Sogo Kenkyu Senta Kenkyu Hokoku. Bulletin of Fisheries Research Agency 19. PNWD-SA-7990.
  • Schultz I.R., A.D. Skillman, and D.L. Woodruff. 2007. "Domoic Acid Excretion In Dungeness Crabs, Razor Clams and Mussels." Marine Environmental Research 66, no. 1:21-23. PNWD-SA-7974. doi:Stenner, Robert D
  • Thom R.M., and C. Judd. 2007. "Model for Coastal Restoration." In Gulf of Mexico Regional Collaborative (GOMRC) User Group. Richland, Washington:Pacific Northwest National Laboratory. PNNL-SA-56374.
  • Vavrinec J., N.P. Kohn, K.D. Hall, and B.A. Romano. 2007. Effects of burial by the disposal of dredged materials from the Columbia River on Pacific razor clams (Siliqua patula). PNNL-16350. Richland, WA: Pacific Northwest National Laboratory.
  • Vavrinec J., W.H. Pearson, N.P. Kohn, J.R. Skalski, C. Lee, K.D. Hall, and B.A. Romano, et al. 2007. Laboratory Assessment of Potential Impacts to Dungeness Crabs from Disposal of Dredged Material from the Columbia River. PNNL-16482. Richland, WA: Pacific Northwest National Laboratory.
  • Whelan G., W.D. Millard, G.M. Gelston, T.P. Khangaonkar, M.A. Pelton, D.L. Strenge, and Z. Yang, et al. 2007. "Using FRAMES to Manage Environmental and Water Resources." In Proceedings of the World Environmental and Water Resources Congress 2007: Restoring our Natural Habitat, May 15–19, 2007, Tampa, Florida, USA, edited by Karen C. Kabbes. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-53354. doi:10.1061/40927(243)130
  • Woodruff D.L., N.P. Kohn, V.I. Cullinan, S.S. Southard, and J. Vavrinec. 2007. Fourth Annual Report: 2007 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation. PNNL-15678-4. Richland, WA: Pacific Northwest National Laboratory.
  • Woodruff D.L., S.S. Southard, V.I. Cullinan, N.P. Kohn, M.G. Anderson, and J. Vavrinec. 2007. Third Annual Report: 2006 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation. PNNL-15678-3. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., and T.P. Khangaonkar. 2007. Development of a Hydrodynamic Model of Puget Sound and Northwest Straits. PNNL-17161. Richland, WA: Pacific Northwest National Laboratory.

2006

  • Diefenderfer H.L., R.M. Thom, A.B. Borde, G.C. Roegner, A.H. Whiting, G.E. Johnson, and E. Dawley, et al. 2006. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2005. PNNL-15934. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E. 2006. Facilitation of the Estuary/Ocean Subgroup for Research, Monitoring, and Evaluation, FY06 Annual Report. PNNL-16142. Richland, WA: Pacific Northwest National Laboratory.
  • Johnson G.E., and D.D. Dauble. 2006. "Surface Flow Outlets to Protect Juvenile Salmonids Passing through Hydropower Dams." Reviews in Fisheries Science 14, no. 3:213-244. PNNL-SA-50342.
  • Khangaonkar T.P., S.A. Breithaupt, and F.C. Kristanovich. 2006. "Restoration of Hydrodynamic and Hydrologic Processes in the Chinook River Estuary, Washington – Feasibility Assessment." In Estaurine and Coastal Modeling Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, edited by M.L. Spaulding, 734-751. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-48779.
  • Lee C., Z. Yang, T.P. Khangaonkar, and A. Divers. 2006. "Application of a Hydrodynamic Model for Assessing the Hydraulic Capacity and Flow Field at Willamette Falls Dam, Oregon." In Estuarine and Coastal Modeling. Proceedings of 9th International Conference held in Charleston, SC, Oct.31-Nov. 2, 2005, edited by M.L. Spaulding, 788-805. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7309.
  • Ploskey G.R., G.E. Johnson, M.A. Weiland, F. Khan, R.P. Mueller, J.A. Serkowski, and C.L. Rakowski, et al. 2006. "Acoustic Camera Evaluation of Juvenile Salmonid Approach and Fate at Surface Flow Outlets of Two Hydropower Dams." In HydroVision 2006, 13 pages. Kansas City, Missouri:HCI Publications. PNNL-SA-48572.
  • Steinmaus K.L., J. Bowles, D.L. Woodruff, T. Donato, W.J. Rhea, W.A. Snyder, and D.R. Korwan, et al. 2006. "Evolution of a Man-Made Plume in Coastal Waters." Eos 87, no. 51:581-592. PNNL-SA-50983.
  • Whelan G., W.D. Millard, G.M. Gelston, M.A. Pelton, Z. Yang, D.L. Strenge, and C. Lee, et al. 2006. Rapid Risk Assessment: FY05 Annual Summary Report. PNNL-15697. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., H. Liu, and T.P. Khangaonkar. 2006. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In Estuarine and Coastal Modeling: Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, edited by M.L. Spaulding, 752-767. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7307.

2005

  • Rakowski C.L., M.C. Richmond, J.A. Serkowski, and G.E. Johnson. 2005. Forebay Computational Fluid Dynamics Modeling for The Dalles Dam to Support Behavior Guidance System Siting Studies. PNNL-15689. Richland, WA: Pacific Northwest National Laboratory.
  • Yang Z., H. Liu, and T.P. Khangaonkar. 2005. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In The 9th International Conference on Estuarine and Coastal Modeling. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7228.

1999

  • Istok J.D., J.E. Amonette, C.R. Cole, J.S. Fruchter, M.D. Humphrey, J.E. Szecsody, and S.S. Teel, et al. 1999. "In Situ Redox Manipulation by Dithionite Injection: Intermediate-Scale Laboratory Experiments." Ground Water 37, no. 6:884-889. PNNL-SA-32702.
  • Last G.V., L.M. Bagaasen, T.J. Gilmore, N.P. Kohn, C.D. Johnson, D.C. Lanigan, and T.L. Liikala, et al. 1999. Surface Water-Sediment Feasibility Study Report for the McCormick and Baxter Superfund Site, Stockton, California. PNNL-11931. Richland, WA: Pacific Northwest National Laboratory.
  • Pearson W.H., R.A. Elston, R.W. Bienert, A.S. Drum, and L.D. Antrim. 1999. "Why did the Prince William Sound, Alaska, Pacific herring (Clupea pallasi) fisheries collapse in 1993 and 1994? Review of hypotheses." Canadian Journal of Fisheries and Aquatic Sciences 56, no. 4:711-737. PNWD-SA-4387.

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