Publications

PMO, Nuclear Sci & Legacy Wast Group

404 publications found:

2023

Gao S., K.T. Pittman, S.J. Edmundson, M.H. Huesemann, M.A. Greer, W. Louie, and P.H. Chen, et al. 2023. "A newly isolated alkaliphilic cyanobacterium for biomass production with direct air CO2 capture." Journal of CO2 Utilization 69. PNNL-SA-178327. doi:10.1016/j.jcou.2023.102399
Huesemann M.H., S. Gao, S.J. Edmundson, L. Laurens, S. Van Wychen, N.H. Beirne, and A.E. Gutknecht, et al. 2023. "DISCOVR Strain Pipeline Screening – Part II: Winter and Summer Season Areal Productivities and Biomass Compositional Shifts in Climate-Simulation Photobioreactor Cultures." Algal Research 70. PNNL-SA-171358. doi:10.1016/j.algal.2022.102948
Huesemann M.H., S.J. Edmundson, S. Gao, S. Negi, T. Dale, A.E. Gutknecht, and H. Daligault, et al. 2023. "DISCOVR Strain Pipeline Screening – Part I: Maximum Specific Growth Rate as a Function of Temperature and Salinity for 38 Candidate Microalgae for Biofuels Production." Algal Research 71. PNNL-SA-172545. doi:10.1016/j.algal.2023.102996
Zang X., T.J. Carlson, J.J. Martinez, J. Lu, and Z. Deng. 2023. "Towards assessing the impact of anthropogenic sound on fishes: gaps, perspectives, and a case study of a large floating bridge." Fisheries Research 265. PNNL-SA-167026. doi:10.1016/j.fishres.2023.106747

2022

Ko Y., M. Coffman, D. Mulvaney, A.E. Copping, H. Wang, and B. Barrett. 2022. "Conflicts of Greens' in Renewable Energy Landscapes: Case Studies and a Planning Framework." In The Routledge Handbook of Sustainable Cities and Landscapes in the Pacific Rim, edited by Y. Yang and A. Taufen. PNNL-SA-137830. doi:10.4324/9781003033530

2021

Cavagnaro R.J., H. Spence, C. Schmaus, W. McShane, and A.E. Copping. 2021. "Ocean Energy for Ocean Worlds." In Proceedings of the 17th Biennial International Conference on Engineering, Science, Construction, and Operations in Challenging Environments (Earth & Space 2021), April 19-23, 2021, VIrtual, Online, edited by P.J. van Susante and A.D. Roberts, 339-350. Reston, Virginia:American Society of Civil Engineers (ASCE). PNNL-SA-148709. doi:10.1061/9780784483374.034
Diefenderfer H.L., A.B. Borde, and V.I. Cullinan. 2021. "Floodplain Wetland Channel Planform, Cross-Sectional Morphology, and Sediment Characteristics Along an Estuarine to Tidal River Gradient." Journal of Geophysical Research. Earth Surface 126, no. 5:e2019JF005391. PNNL-SA-128884. doi:10.1029/2019JF005391
Diefenderfer H.L., G.D. Steyer, M.C. Harwell, A.J. Loschiavo, H.A. Neckles, D.M. Burdick, and G.E. Johnson, et al. 2021. "Applying cumulative effects to strategically advance large-scale ecosystem restoration." Frontiers in Ecology and the Environment 19, no. 2:108-117. PNNL-SA-144525. doi:10.1002/fee.2274

2020

Borde A.B., H.L. Diefenderfer, V.I. Cullinan, S.A. Zimmerman, and R.M. Thom. 2020. "Ecohydrology of wetland plant communities along an estuarine to tidal river gradient." Ecosphere 11, no. 9:e03185. PNNL-SA-140497. doi:10.1002/ecs2.3185
Copping A.E., M.C. Freeman, A.M. Gorton, and L.G. Hemery. 2020. "Risk Retirement – Decreasing Uncertainty and Informing Consenting Permitting Processes for Marine Renewable Energy Development." Journal of Marine Science and Engineering 8, no. 3:172. PNNL-SA-150723. doi:10.3390/jmse8030172
James A., J. Lanksbury, T.P. Khangaonkar, and J. West. 2020. "Evaluating Exposures of Bay Mussels (Mytilus trossulus) to Contaminants of Emerging Concern through Environmental Sampling and Hydrodynamic Modeling." Science of the Total Environment 709. PNNL-SA-150000. doi:10.1016/j.scitotenv.2019.136098
Kirpes R.M., B.L. Rodriguez, S. Kim, S. China, A. Laskin, K. Park, and J. Jung, et al. 2020. "Influence of Marine Emissions and Atmospheric Processing on Individual Particle Composition of Summertime Arctic Aerosol in the Bering Strait and Chukchi Sea." Environmental Science: Processes & Impacts 22, no. 5:1201-1213. PNNL-SA-148936. doi:10.1039/C9EM00495E
Pan H.B., C. Wai, L. Kuo, G.A. Gill, J.S. Wang, J.S. Wang, and R. Joshi, et al. 2020. "A highly efficient uranium grabber derived from acrylic fiber for extracting uranium from seawater." Dalton Transactions 49, no. 9:2803-2810. PNNL-SA-149263. doi:10.1039/C9DT04562G
Preziuso D.C., G. Garcia Medina, R.S. O'Neil, Z. Yang, and T. Wang. 2020. "Evaluating the Potential for Tidal Phase Diversity to Produce Smoother Power Profiles." Journal of Marine Science and Engineering 8, no. 4:246. PNNL-SA-150809. doi:10.3390/jmse8040246
Schultz I., L. Kuo, V.I. Cullinan, and S.E. Cade. 2020. "Occupational and dietary differences in hydroxylated and methoxylated PBDEs and metals in plasma from Puget Sound, Washington, USA region volunteers." Science of the Total Environment 714. PNNL-SA-146859. doi:10.1016/j.scitotenv.2020.136566
Sun N., R. Skaggs, M.S. Wigmosta, A. Coleman, M.H. Huesemann, and S.J. Edmundson. 2020. "Growth Modeling to Evaluate Alternative Cultivation Strategies to Enhance National Microalgal Biomass Production." Algal Research 49. PNNL-SA-145175. doi:10.1016/j.algal.2020.101939
Ticona Rollano F.M., T. Tran, Y. Yu, G. Garcia Medina, and Z. Yang. 2020. "Influence of Time and Frequency Domain Wave Forcing on the Power Estimation of a Wave Energy Converter Array." Journal of Marine Science and Engineering 8, no. 3:171. PNNL-SA-150553. doi:10.3390/jmse8030171
Ward N.D., P. Megonigal, B. Bond-Lamberty, V.L. Bailey, D. Butman, E. Canuel, and H.L. Diefenderfer, et al. 2020. "Representing the Function and Sensitivity of Coastal Interfaces in Earth System Models." Nature Communications 11. PNNL-SA-147328. doi:10.1038/s41467-020-16236-2
Wu W., T. Wang, Z. Yang, and G. Garcia Medina. 2020. "Development and validation of a high-resolution regional wave hindcast model for U.S. West Coast wave resource characterization." Renewable Energy 152. PNNL-SA-150805. doi:10.1016/j.renene.2020.01.077
Yang Z., T. Wang, L. Castrucci, and I. Miller. 2020. "Modeling assessment of storm surge in the Salish Sea." Estuarine, Coastal and Shelf Science 238. PNNL-SA-150224. doi:10.1016/j.ecss.2019.106552

2019

Chamberlain C., T.S. Bianchi, A. Brown, M. Cohen, X. Dong, M. Flint, and J. Martin, et al. 2019. "Mass Balance Implies Holocene Development of a Low-Relief Karst Patterned Landscape." Chemical Geology 527. PNNL-SA-128697. doi:10.1016/j.chemgeo.2018.05.029
Chen M., S. Yim, D. Cox, T. Wang, M.H. Huesemann, Z. Yang, and T. Mumford, et al. 2019. "Hydrodynamic Load Modeling for Offshore Free-Floating Macroalgal Aquaculture under Extreme Environmental Conditions." In Proceedings of the ASME 2019 38th International Conference on Ocean, Offshore and Arctic Engineering (OMAE 2019), June 9-14, 2019, Glasgow, Scotland, 6, Paper No: OMAE2019-96803, V006T05A008. New York, New York:ASME. PNNL-SA-146823. doi:10.1115/OMAE2019-96803
Copping A.E., M.C. Freeman, A.M. Gorton, and L.G. Hemery. 2019. "A Risk Retirement Pathway for Potential Effects of Underwater Noise and Electromagnetic Fields for Marine Renewable Energy." In OCEANS 2019 MTS/IEEE, October 27-31, 2019, Seattle, WA. Piscataway, New Jersey:IEEE. PNNL-SA-147090. doi:10.23919/OCEANS40490.2019.8962841
Gaidarenko O., C. Sathoff, K.M. Staub, M.H. Huesemann, M. Vernet, and M. Hildebrand. 2019. "Timing is everything: diel metabolic and physiological changes in the diatom Cyclotella cryptica grown in simulated outdoor conditions." Algal Research 42. PNNL-SA-138128. doi:10.1016/j.algal.2019.101598
Hagos S.M., L. Leung, M. Ashfaq, and K. Balaguru. 2019. "South Asian Monsoon Precipitation in CMIP5: A link between Inter-model spread and the representations of Tropical Convection." Climate Dynamics 52, no. 1-2:1049-1061. PNNL-SA-122642. doi:10.1007/s00382-018-4177-4
Khangaonkar T.P., A. Nugraha, W. Xu, and K. Balaguru. 2019. "Salish Sea Response to Global Climate Change, Sea Level Rise, and Future Nutrient Loads." Journal of Geophysical Research: Oceans 124, no. 6:3876-3904. PNNL-SA-143747. doi:10.1029/2018JC014670
Khawam G., P. Waller, S. Gao, S.J. Edmundson, M.H. Huesemann, S. Attalah, and K.L. Ogden. 2019. "Simulation of shading and algal growth in experimental raceways." Algal Research 41. PNNL-SA-145038. doi:10.1016/j.algal.2019.101575
Ko Y., B. Barrett, A.E. Copping, A. Sharifi, M. Yarimi, and X. Wang. 2019. "Energy Transitions Towards Low Carbon Resilience: Evaluation of Disaster-Triggered Local and Regional Cases." Sustainability 11, no. 23:Article No. 6801. PNNL-SA-148907. doi:10.3390/su11236801
Kuo L., H.B. Pan, J.E. Strivens, N.J. Schlafer, C.J. Janke, J.R. Wood, and C.M. Wai, et al. 2019. "Assessment of Impacts of Dissolved Organic Matter and Dissolved Iron on the Performance of Amidoxime-Based Adsorbents for Seawater Uranium Extraction." Industrial and Engineering Chemistry Research 58, no. 19:8536-8543. PNNL-SA-141051. doi:10.1021/acs.iecr.9b00670
Kuo L., S.E. Cade, V.I. Cullinan, and I.R. Schultz. 2019. "Polybrominated diphenyl ethers (PBDEs) in plasma from E-waste recyclers, outdoor and indoor workers in the Puget Sound, WA region." Chemosphere 219. PNNL-SA-137096. doi:10.1016/j.chemosphere.2018.12.006
Premathilake M., and T.P. Khangaonkar. 2019. "FVCOM-plume – A Three-dimensional Lagrangian Outfall Plume Dilution and Transport Model for Dynamic Tidal Environments: Model Development." Marine Pollution Bulletin 149. PNNL-SA-144750. doi:10.1016/j.marpolbul.2019.110554
Preziuso D.C., G. Garcia Medina, R.S. O'Neil, and Z. Yang. 2019. "Evaluating the tidal energy resource for smooth power output and grid integration in the United States." In OCEANS 2019 MTS/IEEE, October 27-31, 2019, Seattle, WA. Piscataway, New Jersey:IEEE. PNNL-SA-147231. doi:10.23919/OCEANS40490.2019.8962815
Wang T., and Z. Yang. 2019. "The Nonlinear Response of Storm Surge to Sea-Level Rise: A Modeling Approach." Journal of Coastal Research. JCR 35, no. 2:287-294. PNNL-SA-137846. doi:10.2112/JCOASTRES-D-18-00029.1
Whiting J.M., A.E. Copping, M.C. Freeman, and A.E. Woodbury. 2019. "Tethys Knowledge Management System: Working to Advance the Marine Renewable Energy Industry." International Marine Energy Journal 2, no. 1:29-38. PNNL-SA-132718. doi:10.36688/imej.2.29-38
Whiting J.M., A.E. Copping, M.C. Freeman, and A.E. Woodbury. 2019. "Tethys Knowledge Management System: Working to Advance the Marine Renewable Energy Industry." International Marine Energy Journal 2, no. 1:29-38. PNNL-SA-140333. doi:10.36688/imej.2.29-38
Yang Z., G. Garcia Medina, W. Wu, T. Wang, L. Leung, L. Castrucci, and G. Mauger. 2019. "Modeling Analysis of the Swell and Wind-Sea Climate in the Salish Sea." Estuarine, Coastal and Shelf Science 224. PNNL-SA-140307. doi:10.1016/j.ecss.2019.04.043

2018

Balaguru K., G. Foltz, L. Leung, S.M. Hagos, and D.R. Judi. 2018. "On the use of ocean dynamic temperature for hurricane intensity forecasting." Weather and Forecasting 33, no. 2:411-418. PNNL-SA-129386. doi:10.1175/WAF-D-17-0143.1
Balaguru K., S. Doney, L. Bianucci, P.J. Rasch, L. Leung, J. Yoon, and I.D. Lima. 2018. "Linking deep convection and phytoplankton blooms in the northern Labrador Sea in a changing climate." PLoS One 13, no. 1:Article No. e0191509. PNNL-SA-131791. doi:10.1371/journal.pone.0191509
Cade S.E., L. Kuo, and I.R. Schultz. 2018. "Polybrominated diphenyl ethers and their hydroxylated and methoxylated derivatives in seafood obtained from Puget Sound, WA." Science of the Total Environment 630. PNNL-SA-132941. doi:10.1016/j.scitotenv.2018.02.301
Copping A.E., A. Livecchi, H. Spence, A.M. Gorton, D.S. Jenne, R. Preus, and G.A. Gill, et al. 2018. "Maritime Renewable Energy Markets: Power from the Sea." Marine Technology Society Journal 52, no. 5:99-109. PNNL-SA-134407. doi:10.4031/MTSJ.52.5.3
Copping A.E., M.C. Freeman, A.M. Gorton, and S. Dreyer. 2018. "Managing Environmental Effects to Facilitate Marine Renewable Energy Development." In The 4th Asian Wave and Tidal Energy Conference (AWTEC 2018), September 9-13, 2018, Taipei, Taiwan. Keelung City:National Taiwan Ocean University. PNNL-SA-135255.
Diefenderfer H.L., I. Sinks, S.A. Zimmerman, V.I. Cullinan, and A.B. Borde. 2018. "Designing Topographic Heterogeneity for Tidal Wetland Restoration." Ecological Engineering 123. PNNL-SA-130408. doi:10.1016/j.ecoleng.2018.07.027
Dong X., M. Cohen, J. Martin, D. Mclaughlin, A. Murray, N.D. Ward, and M. Flint, et al. 2018. "Ecohydrologic processes and soil thickness feedbacks control limestone-weathering rates in a karst landscape." Chemical Geology 527, no. 2019:Article No. 118774. PNNL-SA-132178. doi:10.1016/j.chemgeo.2018.05.021
Ebberts B.D., B.D. Zelinsky, J.P. Karnezis, C. Studebaker, S. Lopez-Johnston, A.M. Creason, and L. Krasnow, et al. 2018. "Estuary Ecosystem Restoration: Implementing and Institutionalizing Adaptive Management." Restoration Ecology 26, no. 2:360-369. PNNL-SA-124329. doi:10.1111/rec.12562
Foltz G., K. Balaguru, and S.M. Hagos. 2018. "Interbasin Differences in the Relationship Between SST and Tropical Cyclone Intensification." Monthly Weather Review 146, no. 3:853-870. PNNL-SA-126415. doi:10.1175/MWR-D-17-0155.1
Galeron M., O. Radakovitch, B. Charrière, F. Vaultier, J. Volkman, T.S. Bianchi, and N.D. Ward, et al. 2018. "Lipoxygenase-induced autoxidative degradation of terrestrial particulate organic matter in estuaries: A widespread process enhanced at high and low latitude." Organic Geochemistry 115. PNNL-SA-130078. doi:10.1016/j.orggeochem.2017.10.013
Gao S., P. Waller, G. Khawam, S. Attalah, M.H. Huesemann, and K.L. Ogden. 2018. "Incorporation of salinity, nitrogen, and shading stress factors into the Huesemann Algae Biomass Growth model." Algal Research 35. PNNL-SA-140554. doi:10.1016/j.algal.2018.09.021
Hall J.E., T.P. Khangaonkar, C.A. Rice, J. Chamberlin, T. Zackery, F. Leonetti, and M. Rustay, et al. 2018. "Characterization of Salinity and Temperature Patterns in a Large River Delta to Support Tidal Wetland Habitat Restoration." Northwest Science 92, no. 1:36-52. PNNL-SA-136188. doi:10.3955/046.092.0105
Hou H., Z. Deng, J.J. Martinez, T. Fu, J.P. Duncan, G.E. Johnson, and J. Lu, et al. 2018. "A Hydropower Biological Evaluation Toolset (HBET) for Characterizing Hydraulic Conditions and Impacts of Hydro-Structures on Fish." Energies 11, no. 4:990. PNNL-SA-124812. doi:10.3390/en11040990
Huesemann M.H., A.R. Chavis, S.J. Edmundson, D.K. Rye, S.J. Hobbs, N. Sun, and M.S. Wigmosta. 2018. "Climate-Simulated Raceway Pond Culturing: Quantifying the Maximum Achievable Annual Biomass Productivity of Chlorella sorokiniana in the Contiguous USA." Journal of Applied Phycology 30, no. 1:287-298. PNNL-SA-124328. doi:10.1007/s10811-017-1256-6
Khangaonkar T.P., A. Nugraha, and T. Wang. 2018. "Hydrodynamic Zone of Influence Due to a Floating Structure in a Fjordal Estuary—Hood Canal Bridge Impact Assessment." Journal of Marine Science and Engineering 6, no. 4:Article No. 119. PNNL-SA-146774. doi:10.3390/jmse6040119
Khangaonkar T.P., A. Nugraha, W. Xu, W. Long, L. Bianucci, A. Ahmed, and T.M. Mohamedali, et al. 2018. "Analysis of Hypoxia and Sensitivity to Nutrient Pollution in Salish Sea." Journal of Geophysical Research: Oceans 123, no. 7:4735-4761. PNNL-SA-135617. doi:10.1029/2017JC013650
Kuo L., G.A. Gill, C. Tsouris, L. Rao, H. Pan, C.M. Wai, and C.J. Janke, et al. 2018. "Temperature Dependence of Uranium and Vanadium Adsorption on Amidoxime-Based Adsorbents in Natural Seawater." ChemistrySelect 3, no. 2:843-848. PNNL-SA-126070. doi:10.1002/slct.201701895
Nugraha A., and T.P. Khangaonkar. 2018. "Detailed Hydrodynamic Feasibility Assessment for Leque Island and Zis a Ba Restoration Projects." Journal of Marine Science and Engineering 6, no. 4:Article No. 140. PNNL-SA-141524. doi:10.3390/jmse6040140
Roy Chowdhury T., L.M. Bramer, D.W. Hoyt, Y. Kim, T.O. Metz, L. McCue, and H.L. Diefenderfer, et al. 2018. "Temporal dynamics of CO2 and CH4 loss potentials in response to rapid hydrological shifts in tidal freshwater wetland soils." Ecological Engineering 114. PNNL-SA-123359. doi:10.1016/j.ecoleng.2017.06.041
Schultz A., and R.S. O'Neil. 2018. "Coastal Resilience for the Electric Power System: A National Overview and the Oregon Example." Sea Grant Law and Policy Journal 9, no. 1:3-24. PNNL-SA-126909.
Thom R.M., J. Gaeckle, K.E. Buenau, A.B. Borde, J. Vavrinec, L.M. Aston, and D.L. Woodruff, et al. 2018. "Eelgrass (Zostera marina L.) Restoration in Puget Sound: Development of a Site Suitability Assessment Process." Restoration Ecology 26, no. 6:1066-1074. PNNL-SA-128364. doi:10.1111/rec.12702
Valerio A., M. Kampel, V. Vantrepotte, N.D. Ward, H.O. Sawakuchi, D. Less, and V. Neu, et al. 2018. "Using CDOM optical properties for estimating DOC concentrations and pCO2 in the Lower Amazon River." Optics Express 26, no. 14:A657-A677. PNNL-SA-131638. doi:10.1364/OE.26.00A657
Wang T., Z. Yang, W. Wu, and M.E. Grear. 2018. "A Sensitivity Analysis of the Wind Forcing Effect on the Accuracy of Large-Wave Hindcasting." Journal of Marine Science and Engineering 6, no. 4. PNNL-SA-139620. doi:10.3390/jmse6040139
Ward N.D., H.O. Sawakuchi, and J.E. Richey. 2018. "The Amazon River's Ecosystem—Where Land Meets the Sea." Eos 99, no. January 18, 2018. PNNL-SA-128535. doi:10.1029/2018EO088573
Ward N.D., H.O. Sawakuchi, V. Neu, D. Less, A. Valerio, A. Cunha, and M. Kampel, et al. 2018. "Velocity-amplified microbial respiration rates in the lower Amazon River." Limnology and Oceanography Letters 3, no. 3:265-274. PNNL-SA-123173. doi:10.1002/lol2.10062
Wiechert A.I., A. Ladshaw, G.A. Gill, J.R. Wood, S. Yiacoumi, and C. Tsouris. 2018. "Uranium Resource Recovery from Desalination Plant Feed and Reject Water Using Amidoxime Functionalized Adsorbent." Industrial and Engineering Chemistry Research 57, no. 50:17237-17244. PNNL-SA-140886. doi:10.1021/acs.iecr.8b04673
Wu W., Z. Yang, and T. Wang. 2018. "Wave Resource Characterization Using an Unstructured-grid Modeling Approach." Energies 11, no. 3:Article No. 605. PNNL-SA-132143. doi:10.3390/en11030605
Wu W., Z. Yang, B. Tian, Y. Huang, Y. Zhou, and T. Zhang. 2018. "Impacts of coastal reclamation on wetlands: Loss, resilience, and sustainable management." Estuarine, Coastal and Shelf Science 210. PNNL-SA-135890. doi:10.1016/j.ecss.2018.06.013

2017

Bianchi T.S., D. Butman, P.A. Raymond, N.D. Ward, R. Kates, K. Flessa, and H. Zamora, et al. 2017. "The Experimental Flow to the Colorado River Delta: Effects on Carbon Mobilization in a Dry Watercourse." Journal of Geophysical Research: Biogeosciences 122, no. 3:607-327. PNNL-SA-124474. doi:10.1002/2016JG003555
Breithaupt S.A., A.E. Copping, J. Tagestad, and J.M. Whiting. 2017. "Maritime Route Delineation using AIS Data from the Atlantic Coast of the US." Journal of Navigation 70, no. 2:379-394. PNNL-SA-120338. doi:10.1017/S0373463316000606
Coles G.A., A.C. Dalton, K.M. Branch, R. Prasad, N.P. Kohn, and A.C. Bittner. 2017. "Framework for Evaluating the Impact of Environmental Conditions on Manual Actions." In Advances in Human Factors in Energy: Oil, Gas, Nuclear and Electric Power Industries: Proceedings of the AHFE 2016 International Conference on Human Factors in Energy: Oil, Gas, Nuclear and Electric Power Industries, July 27-31, 2016, Orlando, Florida, edited by SM Cetiner, P Fechtelkotter and M Legatt, 495, 157-169. Cham:Springer International Publishing. PNNL-SA-116565. doi:10.1007/978-3-319-41950-3_14
Copping A.E., M.E. Grear, R.A. Jepsen, C. Chartrand, and A.M. Gorton. 2017. "Understanding the Potential Risk to Marine Mammals from Collision with Tidal Turbines." International Journal of Marine Energy 19. PNNL-SA-120984. doi:10.1016/j.ijome.2017.07.004
Doherty M., P. Yager, M. Moran, V. Coles, C.S. Fortunato, A. Krusche, and P.M. Medeiros, et al. 2017. "Bacterial biogeography across the Amazon river-ocean continuum." Frontiers in Microbiology 8. PNNL-SA-125962. doi:10.3389/fmicb.2017.00882
Duan S., Y. He, S.S. Kaushal, T.S. Bianchi, N.D. Ward, and L. Guo. 2017. "Impact of wetland decline on decreasing dissolved organic carbon concentrations along the Mississippi River continuum." Frontiers in Marine Science 3. PNNL-SA-124217. doi:10.3389/fmars.2016.00280
Edmundson S.J., M.H. Huesemann, R. Kruk, T.L. Lemmon, J.M. Billing, A.J. Schmidt, and D.B. Anderson. 2017. "Phosphorus and Nitrogen Recycle Following Algal Bio-crude Production via Continuous Hydrothermal Liquefaction." Algal Research 26. PNNL-SA-124518. doi:10.1016/j.algal.2017.07.016
Frazar S.L., G. Hund, G.T. Bonheyo, J. Diggans, R.A. Bartholomew, L.K. Gehrig, and M.T. Greaves. 2017. "Defining the Synthetic Biology Supply Chain." Health Security 15, no. 4:392-400. PNNL-SA-122062. doi:10.1089/hs.2016.0083
Gagne-Maynard W., N.D. Ward, R.G. Keil, H.O. Sawakuchi, A. Cunha, V. Neu, and D. Brito, et al. 2017. "Evaluation of primary production in the lower Amazon River based on a dissolved oxygen stable isotopic mass balance." Frontiers in Marine Science 4. PNNL-SA-123464.
Huesemann M.H., P. Williams, S.J. Edmundson, P.H. Chen, R. Kruk, V.I. Cullinan, and B. Crowe, et al. 2017. "The Laboratory Environmental Algae Pond Simulator (LEAPS) Photobioreactor: Validation Using Outdoor Pond Cultures of Chlorella sorokiniana and Nannochloropsis salina." Algal Research 26. PNNL-SA-123118. doi:10.1016/j.algal.2017.06.017
Huesemann M.H., T. Dale, A.R. Chavis, B.J. Crowe, S. Twary, A. Barry, and D.C. Valentine, et al. 2017. "Simulation of outdoor pond cultures using indoor LED-lighted and temperature-controlled raceway ponds and Phenometrics photobioreactors." Algal Research 21. PNNL-SA-117542. doi:10.1016/j.algal.2016.11.016
Joshi I., E. D'Sa, C. Osburn, T.S. Bianchi, D. Ko, D. Oveido-Vargas, and A. Arellano, et al. 2017. "Assessing chromophoric dissolved organic matter (CDOM) distribution, stocks, and fluxes in Apalachicola Bay using combined field, VIIRS ocean color, and model observations." Remote Sensing of Environment 191. PNNL-SA-124218. doi:10.1016/j.rse.2017.01.039
Khangaonkar T.P., A. Nugraha, S. Hinton, D.R. Michalsen, and S.H. Brown. 2017. "Sediment Transport into the Swinomish Navigation Channel, Puget Sound—Habitat Restoration versus Navigation Maintenance Needs." Journal of Marine Science and Engineering 5, no. 2:Article No. 19. PNNL-SA-125518. doi:10.3390/jmse5020019
Khangaonkar T.P., W. Long, and W. Xu. 2017. "Assessment of Circulation and Inter-Basin Transport in the Salish Sea including Johnstone Strait and Discovery Islands Pathways." Ocean Modelling 109. PNNL-SA-122703. doi:10.1016/j.ocemod.2016.11.004
Kuo L., H.B. Pan, C.M. Wai, M. Flicker Byers, E. Schneider, J.E. Strivens, and C.J. Janke, et al. 2017. "Investigations into the reusability of amidoxime-based polymeric adsorbents for seawater uranium extraction." Industrial and Engineering Chemistry Research 56, no. 40:11603-11611. PNNL-SA-127685. doi:10.1021/acs.iecr.7b02893
Ladshaw A., L. Kuo, J.E. Strivens, J.R. Wood, N.J. Schlafer, S. Yiacoumi, and C. Tsouris, et al. 2017. "Influence of Current Velocity on Uranium Adsorption from Seawater Using an Amidoxime-based Polymer Fiber Adsorbent." Industrial and Engineering Chemistry Research 56, no. 8:2205-2211. PNNL-SA-124030. doi:10.1021/acs.iecr.6b04539
Lammers P., M.H. Huesemann, W. Boeing, D.B. Anderson, R.G. Arnold, X. Bai, and M. Bhole, et al. 2017. "Review of the cultivation program within the National Alliance for Advanced Biofuels and Bioproducts." Algal Research 22. PNNL-SA-129222. doi:10.1016/j.algal.2016.11.021
Li C., S. Lee, S.E. Cade, L. Kuo, I.R. Schultz, D.K. Bhatt, and B. Prasad, et al. 2017. "Novel Interactions between Gut Microbiome and Host Drug-processing Genes Modify the Hepatic Metabolism of the Environmental Chemicals PBDEs." Drug Metabolism and Disposition 45, no. 11:1197-1214. PNNL-SA-129301. doi:10.1124/dmd.117.077024
Matzner S., R.E. Hull, G. Harker-Klimes, and V.I. Cullinan. 2017. "Studying fish near ocean energy devices using underwater video." In OCEANS 2017 MTS/IEEE, September 18-28, 2017, Ancorage, Alaska, 1-7. Piscataway, New Jersey:IEEE. PNNL-SA-127299.
Neti V.S., S. Das, S. Brown, C.J. Janke, L. Kuo, G.A. Gill, and S. Dai, et al. 2017. "Efficient Functionalization of Polyethylene Fibers for the Uranium Extraction from Seawater through Atom Transfer Radical Polymerization." Industrial and Engineering Chemistry Research 56, no. 38:10826-10832. PNNL-SA-128982. doi:10.1021/acs.iecr.7b00482
Pan H.B., C.M. Wai, L. Kuo, G.A. Gill, G. Tian, L. Rao, and S. Das, et al. 2017. "Bicarbonate Elution of Uranium from Amidoxime-based Polymer Adsorbents for Sequestering Uranium from Seawater." ChemistrySelect 2, no. 13:3769-3774. PNNL-SA-118924. doi:10.1002/slct.201700177
Satinsky B., C. Smith, S. Sharma, N.D. Ward, A. Krusche, J.E. Richey, and P. Yager, et al. 2017. "Patterns of Bacterial and Archaeal Gene Expression Through the Lower Amazon River." Frontiers in Marine Science 4. PNNL-SA-128662. doi:10.3389/fmars.2017.00253
Sawakuchi H.O., V. Neu, N.D. Ward, M.C. Barros, A. Valerio, W. Gagne-Maynard, and A. Cunha, et al. 2017. "Carbon dioxide emissions along the lower Amazon River." Frontiers in Marine Science 4. PNNL-SA-124475.
Silva B., F. Coutinho, G. Gregoracci, L. Leomil, L. Oliveira, A. Fróes, and D. Tschoeke, et al. 2017. "Virioplankton assemblage structure in the lower river and ocean continuum of the Amazon." mSphere 2, no. 5:e00366-17. PNNL-SA-128630. doi:10.1128/mSphere.00366-17
Tolic N., Y. Liu, A.V. Liyu, Y. Shen, M.M. Tfaily, E.B. Kujawinski, and K. Longnecker, et al. 2017. "Formularity: Software for Automated Formula Assignment of Natural and Other Organic Matter from Ultra-High Resolution Mass Spectra." Analytical Chemistry 89, no. 23:12659-12665. PNNL-SA-128094. doi:10.1021/acs.analchem.7b03318
Wang T., and Z. Yang. 2017. "A Modeling Study of Tidal Energy Extraction and the Associated Impact on Tidal Circulation in a Multi-inlet Bay System of Puget Sound." Renewable Energy 114, no. Part A:204-214. PNNL-SA-124782. doi:10.1016/j.renene.2017.03.049
Ward N.D. 2017. "Editorial: Integrative Research on Organic Matter Cycling Across Aquatic Gradients." Frontiers in Marine Science 4. PNNL-SA-124200.
Ward N.D., T.S. Bianchi, P.M. Medeiros, M. Seidel, J.E. Richey, R.G. Keil, and H.O. Sawakuchi. 2017. "Where carbon goes when water flows: Carbon cycling across the aquatic continuum." Frontiers in Marine Science 4. PNNL-SA-122717.
Ward N.D., T.S. Bianchi, P.M. Medeiros, M. Seidel, R.G. Keil, and C. Robinson. 2017. Integrative Research on Organic Matter Cycling Across Aquatic Gradients. Lausanne:Frontiers Media SA. PNNL-SA-127485. doi:10.3389/978-2-88945-212-5
Whiting J.M., T. Wang, and T.P. Khangaonkar. 2017. Hydrodynamic Model Development and Application for Restoration Alternatives Assessment – Skagit Delta Hydrodynamic Modeling Project (SHDM). PNNL-26867. Richland, WA: Pacific Northwest National Laboratory. Hydrodynamic Model Development and Application for Restoration Alternatives Assessment – Skagit Delta Hydrodynamic Modeling Project (SHDM)
Xiong Y., N.R. Ford, K.A. Hecht, G. Roesijadi, and T. Squier. 2017. "Hydrogel Tethering Enhances Interdomain Stabilization of Single Chain Antibodies." Bioconjugate Chemistry 28, no. 11:2804-2814. PNNL-SA-117286. doi:10.1021/acs.bioconjchem.7b00512
Yang Z., and A.E. Copping. 2017. Marine Renewable Energy: Resource Characterization and Physical Effects. Cham:Springer International Publishing. PNNL-SA-125380. doi:10.1007/978-3-319-53536-4
Yang Z., V.S. Neary, T. Wang, B. Gunawanb, A.R. Dallman, and W. Wu. 2017. "A Wave Model Test Bed Study for Wave Energy Resource Characterization." Renewable Energy 114, no. Part A:132-144. PNNL-SA-122388. doi:10.1016/j.renene.2016.12.057

2016

Abney C.W., S. Das, R.T. Mayes, L. Kuo, J.R. Wood, G.A. Gill, and M. Piechowicz, et al. 2016. "A report on emergent uranyl binding phenomena by an amidoxime phosphonic acid co-polymer." Physical Chemistry Chemical Physics 18, no. 34:23462-23468. PNNL-SA-120240. doi:10.1039/c6cp04772f
Balaguru K., D.R. Judi, and L. Leung. 2016. "Future hurricane storm surge risk for the U.S. gulf and Florida coasts based on projections of thermodynamic potential intensity." Climatic Change 138, no. 1:99–110. PNNL-SA-114029. doi:10.1007/s10584-016-1728-8
Balaguru K., G.R. Foltz, L. Leung, and K. Emanuel. 2016. "Global warming-induced upper-ocean freshening and the intensification of super typhoons." Nature Communications 7. PNNL-SA-116242. doi:10.1038/ncomms13670
Balaguru K., L. Leung, J. Lu, and G.R. Foltz. 2016. "A meridional dipole in pre-monsoon Bay of Bengal tropical cyclone activity induced by ENSO." Journal of Geophysical Research: Atmospheres 121, no. 12:6954-6968. PNNL-SA-113075. doi:10.1002/2016JD024936
Brown S., Y. Yue, L. Kuo, N. Mehio, M. Li, G.A. Gill, and C. Tsouris, et al. 2016. "Uranium Adsorbent Fibers Prepared by Atom-Transfer Radical Polymerization (ATRP) from Poly(vinyl chloride)-co-chlorinated Poly(vinyl chloride) (PVC-co-CPVC) Fiber." Industrial and Engineering Chemistry Research 55, no. 15:4139-4148. PNNL-SA-120242. doi:10.1021/acs.iecr.5b03355
Bull D., D.S. Jenne, C.S. Smith, A.E. Copping, and G. Copeland. 2016. "Levelized cost of energy for a Backward Bent Duct Buoy." International Journal of Marine Energy 16. PNNL-SA-121027. doi:10.1016/j.ijome.2016.07.002
Chouyyok W., C.L. Warner, K.E. Mackie, M.G. Warner, G.A. Gill, and R.S. Addleman. 2016. "Nanostructured Metal Oxide Sorbents for the Collection and Recovery of Uranium from Seawater." Industrial and Engineering Chemistry Research 55, no. 15:4195-4207. PNNL-SA-113189. doi:10.1021/acs.iecr.5b03650
Chouyyok W., J.W. Pittman, M.G. Warner, K.M. Nell, D.C. Clubb, G.A. Gill, and R.S. Addleman. 2016. "Surface Functionalized Nanostructured Ceramic Sorbents for the Effective Collection and Recovery of Uranium from Seawater." Dalton Transactions 45, no. 28:11312-11325. PNNL-SA-114269. doi:10.1039/c6dt01318j
Copping A.E., S.A. Breithaupt, J.M. Whiting, M.E. Grear, J.D. Tagestad, and G.A. Shelton. 2016. "Likelihood of a Marine Vessel Accident from Wind Energy Development in the Atlantic." Wind Energy 19, no. 9:1557-1566. PNNL-SA-108588. doi:10.1002/we.1935
Das S., C. Tsouris, C. Zhang, J. Kim, S. Brown, Y. Oyola, and C. Janke, et al. 2016. "Enhancing Uranium Uptake by Amidoxime Adsorbent in Seawater: An investigation for optimum alkaline conditioning parameters." Industrial and Engineering Chemistry Research 55, no. 15:4294-4302. PNNL-SA-109934. doi:10.1021/acs.iecr.5b02735
Das S., S.S. Brown, R.T. Mayes, C.J. Janke, C. Tsouris, L. Kuo, and G.A. Gill, et al. 2016. "Novel Poly(imide dioxime) Sorbents: Development and testing for enhanced extraction of uranium from natural seawater." Chemical Engineering Journal 298. PNNL-SA-118384. doi:10.1016/j.cej.2016.04.013
Das S., W. Liao, M. Flicker Byers, C. Tsouris, C.J. Janke, R.T. Mayes, and E. Schneider, et al. 2016. "Alternative Alkaline Conditioning of Amidoxime Based Adsorbent for Uranium Extraction from Seawater." Industrial and Engineering Chemistry Research 55, no. 15:4303-4312. PNNL-SA-120372. doi:10.1021/acs.iecr.5b03210
Das S., Y. Oyola, R.T. Mayes, C.J. Janke, L. Kuo, G.A. Gill, and J.R. Wood, et al. 2016. "Extracting Uranium from Seawater: Promising AF Series Adsorbents." Industrial and Engineering Chemistry Research 55, no. 15:4110-4117. PNNL-SA-120398. doi:10.1021/acs.iecr.5b03136
Das S., Y. Oyola, R.T. Mayes, C.J. Janke, L. Kuo, G.A. Gill, and J.R. Wood, et al. 2016. "Extracting Uranium from Seawater: Promising AI Series Adsorbents." Industrial and Engineering Chemistry Research 55, no. 15:4103-4109. PNNL-SA-120256. doi:10.1021/acs.iecr.5b03135
Deng Z., A.H. Colotelo, R.S. Brown, and T.J. Carlson. 2016. "Environmental Issues Related to Conventional Hydropower." In Alternative Energy and Shale Gas Encyclopedia, edited by JH Lehr, J Keeley and TB Kingery. 404-409. Hoboken, New Jersey:John Wiley & Sons, Inc. PNNL-SA-82412. doi:10.1002/9781119066354.ch38
Deng Z., T.J. Carlson, G.R. Ploskey, R.S. Brown, G.E. Johnson, and A.H. Colotelo. 2016. "Experimental and numerical modeling tools for conventional hydropower systems." In Alternative Energy and Shale Gas Encyclopedia, edited by JH Lehr, J Keeley and TB Kingery. 448-464. Hoboken, New Jersey:John Wiley & Sons, Inc. PNNL-SA-90973. doi:10.1002/9781119066354.ch44
Diefenderfer H.L., G.E. Johnson, R.M. Thom, K.E. Buenau, L.A. Weitkamp, C.M. Woodley, and A.B. Borde, et al. 2016. "Evidence-based Evaluation of the Cumulative Effects of Ecosystem Restoration." Ecosphere 7, no. 3:e01242. PNNL-SA-104585. doi:10.1002/ecs2.1242
Feng Z., L. Leung, S.M. Hagos, R.A. Houze, C.D. Burleyson, and K. Balaguru. 2016. "More frequent intense and long-lived storms dominate the springtime trend in central U.S. rainfall." Nature Communications 7. PNNL-SA-122022. doi:10.1038/ncomms13429
Foltz G.R., and K. Balaguru. 2016. "Prolonged El Niño conditions in 2014–15 and the rapid intensification of Hurricane Patricia in the eastern Pacific." Geophysical Research Letters 43, no. 19:10,347-10,355. PNNL-SA-119082. doi:10.1002/2016GL070274
Ford N.R., K.A. Hecht, D. Hu, G. Orr, Y. Xiong, T. Squier, and G.L. Rorrer, et al. 2016. "Antigen Binding and Site-Directed Labeling of Biosilica-Immobilized Fusion Proteins Expressed in Diatoms." ACS Synthetic Biology 5, no. 3:193-199. PNNL-SA-113297. doi:10.1021/acssynbio.5b00191
Fu T., Z. Deng, J.P. Duncan, D. Zhou, T.J. Carlson, G.E. Johnson, and H. Hou. 2016. "Assessing Hydraulic Conditions through Francis turbines using an autonomous sensor device." Renewable Energy 99. PNNL-SA-113347. doi:10.1016/j.renene.2016.08.029
Gill G.A., L. Kuo, C.J. Janke, J. Park, R.T. Jeters, G.T. Bonheyo, and H. Pan, et al. 2016. "The Uranium from Seawater Program at the Pacific Northwest National Laboratory: Overview of Marine Testing, Adsorbent Characterization, Adsorbent Durability, Adsorbent Toxicity, and Deployment Studies." Industrial and Engineering Chemistry Research 55, no. 15:4264-4277. PNNL-SA-113457. doi:10.1021/acs.iecr.5b03649
Gillies K.A., S.M. Krone, J.J. Nagler, and I.R. Schultz. 2016. "A Computational Model of the Rainbow Trout Hypothalamus-Pituitary-Ovarian-Liver Axis." PLoS Computational Biology 12, no. 4:Article No. e1004874. PNWD-SA-10532. doi:10.1371/journal.pcbi.1004874
Harding L.B., I.R. Schultz, D.M. Da Silva, G.M. Ylitalo, D. Ragsdale, S.I. Harris, and S. Bailey, et al. 2016. "Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch)." Aquatic Toxicology 178. PNWD-SA-10556. doi:10.1016/j.aquatox.2016.07.013
Harvey O.R., A.N. Myers-Pigg, L. Kuo, B. Singh, K.A. Kuehn, and P. Louchouarn. 2016. "Discrimination in degradability of Soil Pyrogenic Organic Matter follows a Return-On-Energy-Investment Principle." Environmental Science & Technology 50, no. 16:8578-8585. PNNL-SA-119275. doi:10.1021/acs.est.6b01010
Huesemann M.H., B.J. Crowe, P. Waller, A.R. Chavis, S.J. Hobbs, S.J. Edmundson, and M.S. Wigmosta. 2016. "A Validated Model to Predict Microalgae Growth in Outdoor Pond Cultures Subjected to Fluctuating Light Intensities and Water Temperatures." Algal Research 13. PNNL-SA-111707. doi:10.1016/j.algal.2015.11.008
Jay D.A., A.B. Borde, and H.L. Diefenderfer. 2016. "Tidal-Fluvial and Estuarine Processes in the Lower Columbia River: II. Water Level Models, Floodplain Wetland Inundation, and System Zones." Estuaries and Coasts 39, no. 5:1299-1324. PNNL-SA-123352. doi:10.1007/s12237-016-0082-4
Keillor M.E., C.E. Aalseth, L.M. Arrigo, J.M. Brandenberger, J.M. Cloutier, G.C. Eiden, and J.E. Fast, et al. 2016. "Measurement Background and the Sediment Age-Dating Reach of 32Si." Journal of Radioanalytical and Nuclear Chemistry 307, no. 3:2313-2319. PNNL-SA-100544. doi:10.1007/s10967-015-4592-5
Khangaonkar T., W. Long, B. Sackman, T. Mohamedali, and A.F. Hamlet. 2016. "Sensitivity of Circulation in the Skagit River Estuary to Sea Level Rise and Future Flows." Northwest Science 90, no. 1:94-118. PNNL-SA-112759. doi:10.3955/046.090.0108
Kuo L., C.J. Janke, J.R. Wood, J.E. Strivens, S. Das, Y. Oyola, and R.T. Mayes, et al. 2016. "Characterization and Testing of Amidoxime-Based Adsorbent Materials to Extract Uranium from Natural Seawater." Industrial and Engineering Chemistry Research 55, no. 15:4285-4293. PNNL-SA-120241. doi:10.1021/acs.iecr.5b03267
Larimer C.J., E.M. Winder, R.T. Jeters, M.S. Prowant, I. Nettleship, R.S. Addleman, and G.T. Bonheyo. 2016. "A Method for Rapid Quantitative Assessment of Biofilms with Biomolecular Staining and Image Analysis." Analytical and Bioanalytical Chemistry 408, no. 3:999-1008. PNNL-SA-111904. doi:10.1007/s00216-015-9195-z
Larimer C.J., M.R. Brann, J.D. Suter, G.T. Bonheyo, and R.S. Addleman. 2016. "Are those bugs reflective? Non-destructive biofilm imaging with white light interferometry." In Interferometry XVIII, August 28, 2016, San Diego, California. Proceedings of SPIE, edited by K Creath, J Burk and AA Goncalves, 9960, Paper No. 996004. Bellingham, Washington:SPIE. PNNL-SA-119531. doi:10.1117/12.2239375
Linley T.J., E.J. Krogstad, R.P. Mueller, G.A. Gill, and B.K. Lasorsa. 2016. "Mercury concentrations in Pacific lamprey (Entosphenus tridentatus) and sediments in the Columbia River Basin." Environmental Toxicology and Chemistry 35, no. 10:2571-2576. PNNL-SA-116607. doi:10.1002/etc.3423
Long W., K. Jung, Z. Yang, A.E. Copping, and Z. Deng. 2016. "Coupled Modeling of Hydrodynamics and Sound in Coastal Ocean for Renewable Ocean Energy Development." Marine Technology Society Journal 50, no. 2:27-36. PNNL-SA-114856. doi:10.4031/MTSJ.50.2.6
Pan H., L. Kuo, C.M. Wai, N. Miyamoto, R. Joshi, J.R. Wood, and J.E. Strivens, et al. 2016. "Elution of Uranium and Transition Metals from Amidoxime- Based Polymer Adsorbents for Sequestering Uranium from Seawater." Industrial and Engineering Chemistry Research 55, no. 15:4313-4320. PNNL-SA-113041. doi:10.1021/acs.iecr.5b03307
Park J., G.A. Gill, J.E. Strivens, L. Kuo, R.T. Jeters, A. Avila, and J.R. Wood, et al. 2016. "Effect of biofouling on the performance of amidoxime-based polymeric uranium adsorbents." Industrial and Engineering Chemistry Research 55, no. 15:4328-4338. PNNL-SA-113339. doi:10.1021/acs.iecr.5b03457
Park J., R.T. Jeters, L. Kuo, J.E. Strivens, G.A. Gill, N.J. Schlafer, and G.T. Bonheyo. 2016. "Potential impact of seawater uranium extraction on marine life." Industrial and Engineering Chemistry Research 55, no. 15:4278-4284. PNNL-SA-113338. doi:10.1021/acs.iecr.5b03430
Tardiff M.F., G.T. Bonheyo, K.A. Cort, T.W. Edgar, N.J. Hess, W.J. Hutton, and E.A. Miller, et al. 2016. "Applying the Scientific Method of Cybersecurity Research." In IEEE Symposium on Technologies for Homeland Security (HST 2016), May 10-11, 2016, Waltham, MA. Piscataway, New Jersey:IEEE. PNNL-SA-117303. doi:10.1109/THS.2016.7568886
Tian B., W. Wu, Z. Yang, and Y. Zhou. 2016. "Drivers, Trends, and Potential Impacts of Long-Term Coastal Reclamation in China from 1985 to 2010." Estuarine, Coastal and Shelf Science 170. PNNL-SA-115556. doi:10.1016/j.ecss.2016.01.006
Wood J.R., G.A. Gill, L. Kuo, J.E. Strivens, and K. Choe. 2016. "Comparison of Analytical Methods for the Determination of Uranium in Seawater Using Inductively Coupled Plasma Mass Spectrometry." Industrial and Engineering Chemistry Research 55, no. 15:4344-4350. PNNL-SA-114038. doi:10.1021/acs.iecr.5b03680
Yang Z., and T. Wang. 2016. "NUMERICAL MODELS AS ENABLING TOOLS FOR TIDAL-STREAM ENERGY EXTRACTION AND ENVIRONMENTAL IMPACT ASSESSMENT." In Proceedings of the 35th International Conference on Ocean, Offshore and Arctic Engineering, June 18-24, 2016, Busan, South Korea, 6, V006T05A006, OMAE2016-54223. New York, New York:American Society of Mechanical Engineers. PNNL-SA-116734. doi:10.1115/OMAE2016-54223
Yang Z., S. Taraphdar, T. Wang, L. Leung, and M.E. Grear. 2016. "Uncertainty and feasibility of dynamical downscaling for modeling tropical cyclones for storm surge simulation." Natural Hazards 84, no. 2:1161-1184. PNNL-SA-119692. doi:10.1007/s11069-016-2482-y

2015

Aston L.M., and A.M. Gorton. 2015. Scale-up Trials Using Weed Suppressive Soil Bacteria in Rangeland Restoration – Design, Methods, and Implementation: An Experts' Workshop. PNNL-24833. Richland, WA: Pacific Northwest National Laboratory. Scale-up Trials Using Weed Suppressive Soil Bacteria in Rangeland Restoration – Design, Methods, and Implementation: An Experts' Workshop
Attalah S., P. Waller, G. Khawam, R. Ryan, and M.H. Huesemann. 2015. "ENERGY PRODUCTIVITY OF THE HIGH VELOCITY ALGAE RACEWAY INTEGRATED DESIGN (ARID-HV)." Applied Engineering in Agriculture 31, no. 3:365-375. PNNL-SA-112937. doi:10.13031/aea.31.10209
Balaguru K., G.R. Foltz, L. Leung, E. D'Asaro, K.A. Emanuel, H. Liu, and S.E. Zedler. 2015. "Dynamic Potential Intensity: An improved representation of the ocean's impact on tropical cyclones." Geophysical Research Letters 42, no. 16:6739-6746. PNNL-SA-112691. doi:10.1002/2015GL064822
Buck C., C. Hammerschmidt, K. Bowman, G.A. Gill, and W. Landing. 2015. "Flux of Total Mercury and Methylmercury to the Northern Gulf of Mexico from U.S. Estuaries." Environmental Science & Technology 49, no. 24:13992-13999. PNWD-SA-10543. doi:10.1021/acs.est.5b03538
Copping A.E., G. Zydlewski, and A.M. Redden. 2015. "Special Issue: Renewable Ocean Energy Development and the Environment." Estuaries and Coasts 38, no. 1:S156-S158. PNNL-SA-106884. doi:10.1007/s12237-014-9922-2
Copping A.E., L.A. Hanna, F.B. Van Cleve, K.M. Blake, and R.M. Anderson. 2015. "Environmental Risk Evaluation System – An Approach to Ranking Risk of Ocean Energy Development on Coastal and Estuarine Environments." Estuaries and Coasts 38, no. 1:S287-S302. PNNL-SA-102166. doi:10.1007/s12237-014-9816-3
Deng Z., T.J. Carlson, H. Li, J. Xiao, M.J. Myjak, J. Lu, and J.J. Martinez, et al. 2015. "An injectable acoustic transmitter for juvenile salmon." Scientific Reports 5. PNNL-SA-104621. doi:10.1038/srep08111
Estes M.G., M. Al-Hamdan, J. Ellis, C.R. Judd, D.L. Woodruff, R.M. Thom, and D. Quattrochi, et al. 2015. "A Modeling System to Assess Land Cover Land Use Change Effects on SAV habitat in the Mobile Bay Estuary." Journal of the American Water Resources Association 51, no. 2:513-536. PNWD-SA-10349. doi:10.1111/jawr.12263
Foltz G.R., K. Balaguru, and L. Leung. 2015. "A Reassessment of the Integrated Impact of Tropical Cyclones on Surface Chlorophyll in the Western Subtropical North Atlantic." Geophysical Research Letters 42, no. 4:1158-1164. PNNL-SA-105538. doi:10.1002/2015GL063222
Keillor M.E., C.E. Aalseth, L.M. Arrigo, J.M. Brandenberger, J.M. Cloutier, G.C. Eiden, and J.E. Fast, et al. 2015. "Measurement Background and the Sediment Age-Dating Reach of 32Si." In MARC-X: 10th International Conference on Methods and Applications of Radioanalytical Chemistry, April 12-17, 2015, Kailua-Kona, Hawaii. La Grange Park, Illinois:American Nuclear Society. PNNL-SA-109510.
Long W., Z. Yang, A.E. Copping, K. Jung, and Z. Deng. 2015. "The Development of a Finite Volume Method for Modeling Sound in Coastal Ocean Environment." In OCEANS'15 MTS/IEEE Washington, October 19-22, 2015, Washington DC, 1-6. Piscataway, New Jersey:IEEE. PNNL-SA-112403. doi:10.23919/OCEANS.2015.7404439
Morrison R., P.J. Peshut, R.J. West, and B.K. Lasorsa. 2015. "Mercury (Hg) speciation in coral reef systems of remote Oceania: Implications for the artisanal fisheries of Tutuila, Samoa Islands." Marine Pollution Bulletin 96, no. 1-2:41-56. PNWD-SA-10497. doi:10.1016/j.marpolbul.2015.05.049
Pan H., L. Kuo, J.R. Wood, J.E. Strivens, G.A. Gill, C. Janke, and C.M. Wai. 2015. "Towards Understanding KOH Conditioning of Amidoxime-based Polymer Adsorbents for Sequestering Uranium from Seawater." RSC Advances 5, no. 122:100715–100721. PNNL-SA-110707. doi:10.1039/c5ra14095a
Thom R.M., and A.B. Borde. 2015. "ESTUARINE HABITAT RESTORATION." In Encyclopedia of Estuaries, edited by MJ Kennish. 273-285. Amsterdam:Springer. PNNL-SA-98175. doi:10.1007/978-94-017-8801-4_78
Tian B., Y. Zhou, R.M. Thom, H.L. Diefenderfer, and Q. Yuan. 2015. "Detecting wetland changes in Shanghai, China using FORMOSAT and Landsat TM imagery." Journal of Hydrology 529, no. Part 1:1-10. PNNL-SA-112617. doi:10.1016/j.jhydrol.2015.07.007
Wang T., Z. Yang, and A.E. Copping. 2015. "A Modeling Study of the Potential Water Quality Impacts from In-Stream Tidal Energy Extraction." Estuaries and Coasts 38, no. 1 (Supplement):173-186. PNNL-SA-97921. doi:10.1007/s12237-013-9718-9
Xu B., P. Li, P. Waller, and M.H. Huesemann. 2015. "Evaluation of flow mixing in an ARID-HV algal raceway using statistics of temporal and spatial distribution of fluid particles." Algal Research 9. PNNL-SA-113199. doi:10.1016/j.algal.2015.02.027
Xu W., and T. Khangaonkar. 2015. Temperature Model of the Pelton Round Butte Hydroelectric Project Reservoirs. . PNNL-25094. Richland, WA: Pacific Northwest National Laboratory.
Yang Z., and T. Wang. 2015. "Responses of Estuarine Circulation and Salinity to the Loss of Intertidal Flats – A Modeling Study." Continental Shelf Research 111, no. Part B:159-173. PNNL-SA-111458. doi:10.1016/j.csr.2015.08.011
Yang Z., T. Wang, N. Voisin, and A.E. Copping. 2015. "Estuarine Response to River Flow and Sea-Level Rise under Future Climate Change and Human Development." Estuarine, Coastal and Shelf Science 156. PNNL-SA-102982. doi:10.1016/j.ecss.2014.08.015
Yue Y., R. Mayes, G.A. Gill, L. Kuo, J.R. Wood, A. Binder, and S. Brown, et al. 2015. "Macroporous Monoliths for Trace Metal Extraction from Seawater." RSC Advances 5, no. 62:50005-50010. PNNL-SA-110746. doi:10.1039/c5ra02131f

2014

Chen H., S.S. Cartmell, Q. Wang, T.J. Lozano, Z. Deng, H. Li, and X. Chen, et al. 2014. "Micro-battery Development for Juvenile Salmon Acoustic Telemetry System Applications." Scientific Reports 4. PNNL-SA-84994. doi:10.1038/srep03790
Deng Z., B. Southall, T.J. Carlson, J. Xu, J.J. Martinez, M.A. Weiland, and J.M. Ingraham. 2014. "200 kHz Commercial Sonar Systems Generate Lower Frequency Side Lobes Audible to Some Marine Mammals." PLoS One 9, no. 4:e95315. PNNL-SA-90862. doi:10.1371/journal.pone.0095315
Deng Z., J. Lu, M.J. Myjak, J.J. Martinez, C. Tian, S.J. Morris, and T.J. Carlson, et al. 2014. "Design and Implementation of a new Autonomous Sensor Fish to Support Advanced Hydropower Development." Review of Scientific Instruments 85, no. 11:115001. PNNL-SA-104430. doi:10.1063/1.4900543
Elliott D.C., T.R. Hart, G.G. Neuenschwander, L.J. Rotness, G. Roesijadi, A.H. Zacher, and J.K. Magnuson. 2014. "Hydrothermal Processing of Macroalgal Feedstocks in Continuous-Flow Reactors." ACS Sustainable Chemistry & Engineering 2, no. 2:207-215. PNNL-SA-97137. doi:10.1021/sc400251p
Fleck J., G.A. Gill, B.A. Bergamaschi, T.E. Kraus, B.D. Downing, and C.N. Alpers. 2014. "Concurrent photolytic degradation of aqueous methylmercury and dissolved organic matter." Science of the Total Environment 484. PNWD-SA-10419. doi:10.1016/j.scitotenv.2013.03.107
Gill G.A., L. Kuo, J.R. Wood, and C. Janke. 2014. Complete Laboratory Evaluation and Issue a Report on the Impact of Temperature on Uranium Adsorption. PNNL-23634. Richland, WA: Pacific Northwest National Laboratory.
Jacobs J.M., M. Rhodes, C.W. Brown, R.R. Hood, A. Leight, W. Long, and R. Wood. 2014. "Modeling and forecasting the distribution of Vibrio vulnificus in Chesapeake Bay." Journal of Applied Microbiology 117, no. 5:1312-1327. PNNL-SA-107501. doi:10.1111/jam.12624
Kim J., C. Tsouris, Y. Oyola, C. Janke, R.T. Mayes, S. Dai, and S. Dai, et al. 2014. "Uptake of Uranium from Seawater by Amidoxime-Based Polymeric Adsorbent: Field Experiments, Modeling, and Updated Economic Assessment." Industrial and Engineering Chemistry Research 53, no. 14:6076-6083. PNNL-SA-104179. doi:10.1021/ie4039828
Li X., Z. Deng, Y. Sun, J.J. Martinez, T. Fu, G.A. McMichael, and T.J. Carlson. 2014. "A 3D approximate maximum likelihood solver for localization of fish implanted with acoustic transmitters." Scientific Reports 4. PNWD-SA-10355. doi:10.1038/srep07215
Richmond M.C., J.A. Serkowski, L.L. Ebner, M. Sick, R.S. Brown, and T.J. Carlson. 2014. "Quantifying Barotrauma Risk to Juvenile Fish during Hydro-turbine Passage." Fisheries Research 154, no. 2014:152-164. PNNL-SA-94154. doi:10.1016/j.fishres.2014.01.007
Saito T., S. Brown, S. Chatterjee, J. Kim, C. Tsouris, R. Mayes, and L. Kuo, et al. 2014. "Uranium Recovery from Seawater: Development of Fiber Adsorbents Prepared via Atom-Transfer Radical Polymerization." Journal of Materials Chemistry A 2, no. 35:14674-14681. PNNL-SA-104178. doi:10.1039/C4TA03276D
Skalski J.R., M.B. Eppard, G.R. Ploskey, M.A. Weiland, T.J. Carlson, and R.L. Townsend. 2014. "Assessment of Subyearling Chinook Salmon Survival through the Federal Hydropower Projects in the Main-Stem Columbia River." North American Journal of Fisheries Management 34, no. 4:741-752. PNNL-SA-100146. doi:10.1080/02755947.2014.910577
Thom R.M., S.L. Southard, and A.B. Borde. 2014. "Climate-linked mechanisms driving spatial and temporal variation in eelgrass (Zostera marina L.) growth and assemblage structure in Pacific Northwest estuaries, USA." Journal of Coastal Research. JCR Fall 2014, no. 68:1-11. PNNL-SA-102122. doi:10.2112/SI68-001.1
Wang T., T. Khangaonkar, W. Long, and G.A. Gill. 2014. "Development of a Kelp-type Structure Module in a Coastal Ocean Model to Assess the Hydrodynamic Impact of Seawater Uranium Extraction Technology." Journal of Marine Science and Engineering 2, no. 1:81-92. PNNL-SA-100036. doi:10.3390/jmse2010081
Windham-Myers L., J. Fleck, J.T. Ackerman, M. Marvin-DiPasquale, C. Stricker, W.A. Heim, and P. Bachand, et al. 2014. "Mercury Cycling In Agricultural and Managed Wetlands: A Synthesis of Methylmercury Production, Hydrologic Export, and Bioaccumulation from an Integrated Field Study." Science of the Total Environment 484. PNWD-SA-9925. doi:10.1016/j.scitotenv.2014.01.033
Xiao J., Z. Deng, T.J. Carlson, and M.B. Eppard. 2014. "Building better microbatteries: from fundamental research to manufacturing." SPIE Newsroom March 31, 2014. PNNL-SA-101026.
Yang Z., T. Wang, A.E. Copping, and S.H. Geerlofs. 2014. "Modeling of In-stream Tidal Energy Development and its Potential Effects in Tacoma Narrows, Washington, USA." Ocean and Coastal Management 99. PNNL-SA-100989. doi:10.1016/j.ocecoaman.2014.02.010

2013

Brown C.W., R.R. Hood, W. Long, J.M. Jacobs, D.L. Ramers, C. Wazniak, and J.D. Wiggert, et al. 2013. "Ecological Forecasting in Chesapeake Bay: Using a Mechanistic-Empirical Modelling Approach." Journal of Marine Systems 125. PNNL-SA-106547. doi:10.1016/j.jmarsys.2012.12.007
Bryson A.J., C.M. Woodley, R.K. Karls, K.D. Hall, M.A. Weiland, Z. Deng, and T.J. Carlson, et al. 2013. "Comparison of 180-degree and 90-degree needle rotation to reduce wound size in PIT-injected juvenile Chinook salmon." Fisheries Research 143. PNNL-SA-91825. doi:10.1016/j.fishres.2013.02.011
Casper B., M.E. Smith, M.B. Halvorsen, H. Sun, T.J. Carlson, and A.N. Popper. 2013. "Effects of exposure to pile driving sounds on fish inner ear tissues." Comparative Biochemistry and Physiology. Part A: Molecular & Integrative Physiology 166, no. 2:352-360. PNWD-SA-10224. doi:10.1016/j.cbpa.2013.07.008
Copping A.E., C. Smith, L.A. Hanna, H. Battey, J.M. Whiting, M.C. Reed, and J. Brown-Saracino, et al. 2013. "Tethys: Developing a Commons for Understanding Environmental Effects of Ocean Renewable Energy." International Journal of Marine Energy 3-4. PNNL-SA-99308. doi:10.1016/j.ijome.2013.11.004
Deng Z., T.J. Carlson, T. Fu, H. Ren, J.J. Martinez, J.R. Myers, and S. Matzner, et al. 2013. "Design and implementation of a marine animal alert system to support Marine Renewable Energy." Marine Technology Society Journal 47, no. 4:113-121. PNNL-SA-94627. doi:10.4031/MTSJ.47.4.2
Khangaonkar T., and T. Wang. 2013. "Potential alteration of fjordal circulation due to a large floating structure—Numerical investigation with application to Hood Canal basin in Puget Sound." Applied Ocean Research 39. PNNL-SA-71339. doi:10.1016/j.apor.2012.11.003
Meduri P., H. Chen, J. Xiao, J.J. Martinez, T.J. Carlson, J. Zhang, and Z. Deng. 2013. "Tunable Electrochemical Properties of Fluorinated Graphene." Journal of Materials Chemistry A 1, no. 27:7866–7869. PNNL-SA-91948. doi:10.1039/c3ta11710c
Woodley C.M., E.S. Fischer, K.A. Wagner, M.A. Weiland, M.B. Eppard, and T.J. Carlson. 2013. "COMPLIANCE STUDIES: WHAT ABOUT THE FISH?." In HydroVision International Conference, July 23-26, 2014, Denver, Colorado. Tulsa, Oklahoma:HydroVision International. PNNL-SA-95784.
Yager J.W., P.R. Gentry, R.S. Thomas, L. Pluta, A. Efremenko, M. Black, and L.L. Arnold, et al. 2013. "Evaluation of gene expression changes in human primary uroepithelial cells following 24-Hr exposures to inorganic arsenic and its methylated metabolites." Environmental and Molecular Mutagenesis 54, no. 2:82-98. PNWD-SA-10052. doi:10.1002/em.21749
Yager J.W., P.R. Gentry, R.S. Thomas, L. Pluta, A. Efremenko, M. Black, and L.L. Arnold, et al. 2013. "Evaluation of gene expression changes in human primary uroepithelial cells following 24-Hr exposures to inorganic arsenic and its methylated metabolites." Environmental and Molecular Mutagenesis 54, no. 2:82-98. PNWD-SA-9769. doi:10.1002/em.21749
Yager J.W., P.R. Gentry, R.S. Thomas, L. Pluta, A. Efremenko, M. Black, and L.L. Arnold, et al. 2013. "Evaluation of Gene Expression Changes in Human Primary Uroepithelial Cells Following 24-Hr Exposures to Inorganic Arsenic and ItsMethylatedMetabolites." Environmental and Molecular Mutagenesis 54, no. 2:82-98. PNWD-SA-10428. doi:10.1002/em.21749
Yang Z., T. Wang, and A.E. Copping. 2013. "Modeling Tidal Stream Energy Extraction and its Effects on Transport Processes in a Tidal Channel and Bay System Using a Three-dimensional Coastal Ocean Model." Renewable Energy 50. PNNL-SA-88183. doi:10.1016/j.renene.2012.07.024

2012

Brown R.S., B.D. Pflugrath, A.H. Colotelo, C.J. Brauner, T.J. Carlson, Z. Deng, and A. Seaburg. 2012. "Pathways of Barotrauma in Juvenile Salmonids Exposed to Simulated Hydroturbine Passage: Boyle's Law vs. Henry's Law." Fisheries Research 121-122, no. 1:43-50. PNNL-SA-83903. doi:10.1016/j.fishres.2012.01.006
Brown R.S., B.D. Pflugrath, T.J. Carlson, and Z. Deng. 2012. "The Effect of an Externally Attached Neutrally Buoyant Transmitter on Mortal Injury during Simulated Hydroturbine Passage." Journal of Renewable and Sustainable Energy 4, no. 1:Article No. 013107. PNNL-SA-83175. doi:10.1063/1.3682062
Brown R.S., T.J. Carlson, A.J. Gingerich, J.R. Stephenson, B.D. Pflugrath, A.E. Welch, and M. Langeslay, et al. 2012. "Quantifying mortal injury of juvenile Chinook salmon exposed to simulated hydro-turbine passage." Transactions of the American Fisheries Society 141, no. 1:147-157. PNNL-SA-76832. doi:10.1080/00028487.2011.650274
Carlson T.J., R.S. Brown, J.R. Stephenson, B.D. Pflugrath, A.H. Colotelo, A.J. Gingerich, and P.L. Benjamin, et al. 2012. "The Influence of Tag Presence on the Mortality of Juvenile Chinook Salmon Exposed to Simulated Hydroturbine Passage: Implications for Survival Estimates and Management of Hydroelectric Facilities." North American Journal of Fisheries Management 32, no. 2:249-261. PNNL-SA-76806. doi:10.1080/02755947.2012.661384
Casper B., A.N. Popper, F. Matthews, T.J. Carlson, and M.B. Halvorsen. 2012. "Recovery of Barotrauma Injuries in Chinook Salmon, Oncorhynchus tshawytscha from Exposure to Pile Driving Sound." PLoS One 7, no. 6:Article No. e39593. PNWD-SA-9899. doi:10.1371/journal.pone.0039593
Colotelo A.H., B.D. Pflugrath, R.S. Brown, C.J. Brauner, R.P. Mueller, T.J. Carlson, and Z. Deng, et al. 2012. "The effect of rapid and sustained decompression on barotrauma in juvenile brook lamprey and Pacific lamprey: implications for passage at hydroelectric facilities." Fisheries Research 129–130. PNNL-SA-85601. doi:10.1016/j.fishres.2012.06.001
Deng Z., and T.J. Carlson. 2012. "Editorial: Time for green certification for all hydropower?." Journal of Renewable and Sustainable Energy 4, no. 2:Article No. 020401. PNNL-SA-86848.
Deng Z., J.J. Martinez, A.H. Colotelo, T.K. Abel, A.P. LeBarge, R.S. Brown, and B.D. Pflugrath, et al. 2012. "Development of External and Neutrally Buoyant Acoustic Transmitters for Juvenile Salmon Turbine Passage Evaluation." Fisheries Research 113, no. 1:94–105. PNNL-SA-79155. doi:10.1016/j.fishres.2011.08.018
Halvorsen M.B., B. Casper, C.M. Woodley, T.J. Carlson, and A.N. Popper. 2012. "Threshold for Onset of Injury in Chinook Salmon from Exposure to Impulsive Pile Driving Sounds." PLoS One 7, no. 6:e38968. PNWD-SA-9800. doi:10.1371/journal.pone.0038968
Halvorsen M.B., B. Casper, F. Matthews, T.J. Carlson, and A.N. Popper. 2012. "Effects of exposure to pile driving sounds on the lake sturgeon, Nile tilapia , and hogchoker." Royal Society of London. Proceedings B. Biological Sciences 279, no. 1748:4705-4714. PNWD-SA-9898. doi:10.1098/rspb.2012.1544
Huesemann M.H., L. Kuo, L.A. Urquhart, G.A. Gill, and G. Roesijadi. 2012. "Acetone-butanol Fermentation of Marine Macroalgae." Bioresource Technology 108. PNNL-SA-83984. doi:10.1016/j.biortech.2011.12.148
Janak J.M., R.S. Brown, A.H. Colotelo, B.D. Pflugrath, J.R. Stephenson, Z. Deng, and T.J. Carlson, et al. 2012. "The Effects of Neutrally Buoyant, Externally Attached Transmitters on Swimming Performance and Predator Avoidance of Juvenile Chinook Salmon." Transactions of the American Fisheries Society 141, no. 5:1424-1432. PNNL-SA-82928. doi:10.1080/00028487.2012.688915
Johnson G.E., W.H. Pearson, S.L. Southard, and R.P. Mueller. 2012. "Upstream Movement of Juvenile Coho Salmon in Relation to Environmental Conditions in a Culvert Test Bed." Transactions of the American Fisheries Society 141, no. 6:1520-1531. PNWD-SA-8455. doi:10.1080/00028487.2012.699013
Khangaonkar T., B.S. Sackmann, W. Long, T. Mohamedali, and M. Roberts. 2012. "Simulation of annual biogeochemical cycles of nutrient balance, phytoplankton bloom(s), and DO in Puget Sound using an unstructured grid model." Ocean Dynamics 62, no. 9:1353-1379. PNNL-SA-89087. doi:10.1007/s10236-012-0562-4
Kim T., and T. Khangaonkar. 2012. "An offline unstructured biogeochemical model (UBM) for complex estuarine and coastal environments." Environmental Modelling & Software 31, no. 1:47-63. PNNL-SA-85796. doi:10.1016/j.envsoft.2011.11.010
Lamborg C., C. Hammerschmidt, G.A. Gill, R.P. Mason, and S. Gichuki. 2012. "An intercomparison of procedures for the determination of total mercury in seawater and recommendations regarding mercury speciation during GEOTRACES cruises." Limnology and Oceanography 10. PNWD-SA-9802. doi:10.4319/lom.2012.10.90
Lasorsa B.K., G.A. Gill, and M. Horvat. 2012. "Analytical Methods for Measuring Mercury in Water, Sediment and Biota." In Mercury in the Environment: Pattern and Process, edited by MS Bank. 24-54. Berkeley, California:University of California Press. PNNL-SA-70191.
Li H., Z. Deng, and T.J. Carlson. 2012. "Piezoelectric materials used in underwater acoustic transducers." Sensor Letters 10, no. 3/4:679-697. PNNL-SA-84860.
Li H., Z. Deng, Y. Yuan, and T.J. Carlson. 2012. "Design Parameters of a Miniaturized Piezoelectric Underwater Acoustic Transmitter." Sensors 12, no. 7:9098-9109. PNNL-SA-82854. doi:10.3390/s120709098
Louchouarn P., L. Kuo, J.M. Brandenberger, F. Marcantonio, C.R. Garland, G.A. Gill, and V.I. Cullinan. 2012. "Pyrogenic inputs of anthropogenic Pb and Hg to sediments of the Hood Canal, Washington, in the 20th century: Source evidence from stable Pb isotopes and PAH signatures." Environmental Science & Technology 46, no. 11:5772-5781. PNWD-SA-9844. doi:10.1021/es300269t
Marshall K.E., E.W. Robinson, S.M. Hengel, L. Pasa-Tolic, and G. Roesijadi. 2012. "FRET Imaging of Diatoms Expressing a Biosilica-Localized Ribose Sensor." PLoS One 7, no. 3:e33771 1-8. PNNL-SA-84370. doi:10.1371/journal.pone.0033771
Pflugrath B.D., R.S. Brown, and T.J. Carlson. 2012. "Maximum Neutral Buoyancy Depth of Juvenile Chinook Salmon: Implications for Survival during Hydroturbine Passage." Transactions of the American Fisheries Society 141, no. 2:520-525. PNNL-SA-80256. doi:10.1080/00028487.2012.670187
Ren H., M.B. Halvorsen, Z. Deng, and T.J. Carlson. 2012. "An Aquatic Acoustic Metrics Interface Utility for Underwater Sound Monitoring and Analysis." Sensors 12, no. 6:7438-7450. PNNL-SA-84582. doi:10.3390/s120607438
Ren H., Z. Deng, T.J. Carlson, Y. Sun, T. Fu, J.J. Martinez, and S. Matzner, et al. 2012. "Localization of Southern Resident Killer Whales Using Two Star Arrays to Support Marine Renewable Energy." In OCEANS 2012 MTS/IEEE, October 14-19, 2012, Hampton Roads, Virginia. Piscataway, New Jersey:The Institute of Electrical and Electronics Engineers. PNNL-SA-90424. doi:10.1109/OCEANS.2012.6405010
Thom R.M., H.L. Diefenderfer, J. Vavrinec, and A.B. Borde. 2012. "Restoring Resiliency: Case Studies from Pacific Northwest Estuarine Eelgrass (Zostera marina L.) Ecosystems." Estuaries and Coasts 35, no. 1:78-91. PNNL-SA-68902. doi:10.1007/s12237-011-9430-6
Webb-Robertson B.M., H.W. Kreuzer, G.L. Hart, J. Ehleringer, J.B. West, J.B. West, and G.A. Gill, et al. 2012. "Bayesian Integration of Isotope Ratios for Geographic Sourcing of Castor Beans." Journal of Biomedicine and Biotechnology 2012. PNNL-SA-83058. doi:10.1155/2012/450967
Xu J., Z. Deng, J.J. Martinez, T.J. Carlson, J.R. Myers, and M.A. Weiland. 2012. "Broadband Acoustic Environment at a Tidal Energy Site in Puget Sound." Marine Technology Society Journal 46, no. 2:65-73. PNNL-SA-83076. doi:10.4031/MTSJ.46.2.1
Xu J., Z. Deng, T.J. Carlson, and B. Moore. 2012. "Target Strength of Southern Resident Killer Whales (Orcinus orca): Measurement and Modeling." Marine Technology Society Journal 46, no. 2:74-84. PNNL-SA-82872. doi:10.4031/MTSJ.46.2.2
Yang Z., T. Wang, T. Khangaonkar, and S.A. Breithaupt. 2012. "Integrated Modeling of Flood Flows and Tidal Hydrodynamics over a Coastal Floodplain." Environmental Fluid Mechanics 12, no. 1:63-80. PNWD-SA-9428. doi:10.1007/s10652-011-9214-3

2011

Breithaupt S.A., and T. Khangaonkar. 2011. "Effects of Wetland Restoration on Floodplain Hydrodynamics under Extreme Flooding Conditions." Ecological Restoration 29, no. 1-2:161-172. PNWD-SA-9752. doi:10.3368/er.29.1-2.161
Cada G.F., A.E. Copping, and J. Roberts. 2011. "Identifying How Marine and Hydrokinetic Devices Affect Aquatic Environments." Hydro Review April 24, 2011. PNNL-SA-78066.
Carlson T.J., and M.C. Richmond. 2011. "Strategies for Assessment of the Biological Performance and Design of Hydroturbines." In EPRI-DOE Conference on Environmentally-Enhanced Hydro Turbines, May 19-20, 2011, Washington DC. Palo Alto, California:Electric Power Research Institute (EPRI). PNNL-SA-79786.
Copping A.E., and S.H. Geerlofs. 2011. "The Contribution of Environmental Siting and Permitting Requirements to the Cost of Energy for Marine and Hydrokinetic Devices." In Proceedings of the 9th European Wave and Tidal Energy Conference, September 5-9, 2011, Southampton, United Kingdom. Southampton:EWTEC. PNNL-SA-79512.
Deng Z., M.A. Weiland, T. Fu, T.A. Seim, B.L. Lamarche, E.Y. Choi, and T.J. Carlson, et al. 2011. "A Cabled Acoustic Telemetry System for Detecting and Tracking Juvenile Salmon: Part 2. Three-Dimensional Tracking and Passage Outcomes." Sensors 11, no. 6:5661-5676. PNNL-SA-78690. doi:10.3390/s110605661
Deng Z., R.S. Brown, T.J. Carlson, J.J. Martinez, A.H. Colotelo, B.D. Pflugrath, and T.K. Abel, et al. 2011. "Development of external and neutrally buoyant acoustic transmitters for turbine passage evaluation." In EPRI-DOE Conference on Environmentally-Enhanced Hydro Turbines, May 19-20, 2011, Washington DC, 155-164. Palo Alto, California:EPRI. PNNL-SA-79460. doi:10.2172/1057387
Deng Z., T.J. Carlson, D.D. Dauble, and G.R. Ploskey. 2011. "Fish Passage Assessment of an Advanced Hydropower Turbine and Conventional Turbine Using Blade-strike Modeling." Energies 4, no. 1:57-67. PNNL-SA-75408. doi:10.3390/en4010057
Deng Z., T.J. Carlson, J. Xu, J.J. Martinez, M.A. Weiland, R.P. Mueller, and J.R. Myers, et al. 2011. "Design and operation specifications of an active monitoring system for detecting southern resident killer whales." In OCEANS 2011, September 19-22, 2011, Kona, Hawaii. Piscataway, New Jersey:IEEE. PNNL-SA-81594.
Diefenderfer H.L., R.M. Thom, G.E. Johnson, J.R. Skalski, K.A. Vogt, B.D. Ebberts, and G.C. Roegner, et al. 2011. "A Levels-of-Evidence Approach for Assessing Cumulative Ecosystem Response to Estuary and River Restoration Programs." Ecological Restoration 29, no. 1-2:111-132. PNNL-SA-55734.
Khangaonkar T., and Z. Yang. 2011. "A High Resolution Hydrodynamic Model of Puget Sound to Support Nearshore Restoration Feasibility Analysis and Design." Ecological Restoration 29, no. 1-2:173-184. PNNL-SA-70081. doi:10.3368/er.29.1-2.173
Khangaonkar T., Z. Yang, T. Kim, and M. Roberts. 2011. "Tidally averaged circulation in Puget Sound sub-basins: Comparison of historical data, analytical model, and numerical model." Estuarine, Coastal and Shelf Science 93, no. 4:305-319. PNNL-SA-80338. doi:10.1016/j.ecss.2011.04.016
Martinez J.J., J.R. Myers, T.J. Carlson, Z. Deng, J.S. Rohrer, K.A. Caviggia, and C.M. Woodley, et al. 2011. "Design and implementation of an underwater sound recording device." Sensors 11, no. 9:8519-8535. PNNL-SA-80867. doi:10.3390/s110908519
Matzner S., T. Fu, H. Ren, Z. Deng, Y. Sun, and T.J. Carlson. 2011. "Operational Performance Analysis of Passive Acoustic Monitoring for Killer Whales." In OCEANS 2011, September 19-22, 2011, Kona, Hawaii. Piscataway, New Jersey:IEEE. PNNL-SA-81899.
McGraw K.A., and R.M. Thom. 2011. "Protection and Restoration: Are We Having an Effect?." Ecological Restoration 29, no. 1-2:2-7. PNNL-SA-78068.
Meduri P., H. Chen, X. Chen, J. Xiao, M.E. Gross, T.J. Carlson, and J. Zhang, et al. 2011. "Hybrid CFx–Ag2V4O11 as a high-energy, power density cathode for application in an underwater acoustic microtransmitter." Electrochemistry Communications 13, no. 12:1344-1348. PNNL-SA-81110. doi:10.1016/j.elecom.2011.08.006
Miracle A.L., and T.J. Carlson. 2011. "A Safer Passage." International Water Power & Dam Construction. PNNL-SA-77155.
Richmond M.C., J.A. Serkowski, T.J. Carlson, L.L. Ebner, M. Sick, and G.F. Cada. 2011. "Computational Fluid Dynamics Framework for Turbine Biological Performance Assessment." In EPRI-DOE Conference on Environmentally-Enhanced Hydro Turbines, May 19-20, 2011, Washington DC. Palo Alto, California:Electric Power Research Institute (EPRI). PNNL-SA-79735.
Thom R.M., E. Haas, N.R. Evans, and G.D. Williams. 2011. "Lower Columbia River and Estuary Habitat Restoration Prioritization Framework." Ecological Restoration 29, no. 1-2:94-110. PNWD-SA-9159.
Thom R.M., H.L. Diefenderfer, J.E. Adkins, C. Judd, M.G. Anderson, K.E. Buenau, and A.B. Borde, et al. 2011. "Guidelines, processes and tools for coastal ecosystem restoration, with examples from the United States." Plankton & Benthos Research 5, no. Supplement:185-201. PNNL-SA-73076. doi:10.3800/pbr.5.185
Weiland M.A., Z. Deng, T.A. Seim, B.L. Lamarche, E.Y. Choi, T. Fu, and T.J. Carlson, et al. 2011. "A cabled acoustic telemetry system for detecting and tracking juvenile salmon: Part 1. Engineering design and instrumentation." Sensors 11, no. 6:5645-5660. PNNL-SA-78490. doi:10.3390/s110605645
Xu J., Z. Deng, J.J. Martinez, T.J. Carlson, J.R. Myers, M.A. Weiland, and M.E. Jones. 2011. "Acoustic Environment of Admiralty Inlet: Broadband Noise Measurements." In OCEANS 2011, September 19-22, 2011, Kona, Hawaii. Piscataway, New Jersey:IEEE. PNNL-SA-81421.
Yang Z., T. Khangaonkar, and T. Wang. 2011. "Use of Advanced Meteorological Model Output for Coastal Ocean Modeling in Puget Sound." International Journal of Ocean and Climate Systems 2, no. 2:101-117. PNNL-SA-80241.

2010

Copping A.E., G.F. Cada, J. Roberts, and M. Bevelhimer. 2010. "Accelerating Ocean Energy to the Marketplace – Environmental Research at the U.S. Department of Energy National Laboratories." In 3rd International Conference on Ocean Energy, October 6-8, 2010, Bilbao, Spain. Bilbao:Ente Vasco de la Energía (EVE) - Tecnalia. PNNL-SA-72924.
Copping A.E., R.M. Anderson, and F.B. Van Cleve. 2010. "Applying Risk Science and Stakeholder Engagement to Overcome Environmental Barriers to Marine and Hydrokinetic Energy Projects." In Oceans 2010: MTS/IEEE Conference Proceedings, September 20-23, 2010, Seattle, WA. Piscataway, New Jersey:IEEE. PNNL-SA-74526. doi:10.1109/OCEANS.2010.5664492
Deng Z., M.A. Weiland, T.J. Carlson, and M.B. Eppard. 2010. "Design and Instrumentation of a Measurement and Calibration System for an Acoustic Telemetry System." Sensors 10, no. 4:3090-3099. PNNL-SA-71221. doi:10.3390/s100403090
Deng Z., T.J. Carlson, J.P. Duncan, M.C. Richmond, and D.D. Dauble. 2010. "Use of an Autonomous Sensor to Evaluate the Biological Performance of the Advanced Turbine at Wanapum Dam." Journal of Renewable and Sustainable Energy 2, no. 5:053104. PNNL-SA-72709. doi:10.1063/1.3501336
Huesemann M.H., G. Roesijadi, J. Benemann, and F.B. Metting. 2010. "Biofuels from Microalgae and Seaweeds." In Biomass to Biofuels: Strategies for Global Industries, edited by A Vertex, N Qureshi, H Yukawa, HP Blaschek. 165-184. New York, New York:John Wiley & Sons, Ltd. PNNL-SA-58682.
Khangaonkar T., Z. Yang, S.H. Geerlofs, and A. Copping. 2010. "Overland Tidal Power Generation Using Modular Tidal Prism." In Estuarine and Coastal Modeling: Proceedings of the 11th International Conference, November 4-6, 2009, Seattle, WA, edited by ML Spaulding, 466-477. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-71118. doi:10.1061/41121(388)28
Kim T., R.G. Labiosa, T. Khangaonkar, Z. Yang, C. Chen, J. Qi, and C. Cerco. 2010. "Development and evaluation of a coupled hydrodynamic (FVCOM) and water quality model (CE-QUAL-ICM)." In Proceedings of the 11th International Conference on Estuarine and Coastal Modeling, November 4-6, 2009, Seattle, Washington, edited by ML Spaulding, 373-388. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-69320. doi:10.1061/41121(388)23
Kramer V.J., M.A. Etterson, M. Hecker, C.A. Murphy, G. Roesijadi, D.J. Spade, and J.A. Spromberg, et al. 2010. "Adverse Outcome Pathways and Ecological Risk Assessment: Bridging to Population-Level Effects." Environmental Toxicology and Chemistry 30, no. 1:64-76. PNNL-SA-68173. doi:10.1002/etc.375
McMichael G.A., M.B. Eppard, T.J. Carlson, J.A. Carter, B.D. Ebberts, R.S. Brown, and M.A. Weiland, et al. 2010. "The Juvenile Salmon Acoustic Telemetry System; A New Tool." Fisheries 35, no. 1:9-22. PNWD-SA-7687.
Salice C.J., T. Anderson, and G. Roesijadi. 2010. "Adaptive responses and latent costs of multigeneration cadmium exposure in parasite resistant and susceptible strains of a freshwater snail." Ecotoxicology 19, no. 8:1466-1475. PNNL-SA-68653. doi:10.1007/s10646-010-0532-x
Stephenson J.R., A.J. Gingerich, R.S. Brown, B.D. Pflugrath, Z. Deng, T.J. Carlson, and M. Langeslay, et al. 2010. "Assessing barotrauma in neutrally and negatively bouyant juvenile salmonids exposed to simulated hydro-turbine passage using a mobile aquatic barotrauma laboratory." Fisheries Research 106, no. 3:271–278. PNNL-SA-72828. doi:10.1016/j.fishres.2010.08.006
Ward J.A., I.R. Schultz, D.L. Woodruff, G. Roesijadi, and A.E. Copping. 2010. "Assessing the Effects of Marine and Hydrokinetic Energy Development on Marine and Estuarine Resources." In OCEANS 2010, September 20-23, 2010, Seattle, WA. Piscataway, New Jersey:IEEE. PNNL-SA-74186. doi:10.1109/OCEANS.2010.5664064
Yang Z., and T. Khangaonkar. 2010. "Multi-scale modeling of Puget Sound using an unstructured-grid coastal ocean model: from tide flats to estuaries and coastal waters." Ocean Dynamics 60, no. 6:1621-1637. PNNL-SA-77035. doi:10.1007/s10236-010-0348-5
Yang Z., K.L. Sobocinski, D.W. Heatwole, T. Khangaonkar, R.M. Thom, and R. Fuller. 2010. "Hydrodynamic and Ecological Assessment of Nearshore Restoration: A Modeling Study." Ecological Modelling 221, no. 7:1043-1053. PNNL-SA-61739. doi:10.1016/j.ecolmodel.2009.07.011
Yang Z., T. Khangaonkar, M. Calvi, and K. Nelson. 2010. "Simulation of Cumulative Effects of Nearshore Restoration Projects on Estuarine Hydrodynamics." Ecological Modelling 221, no. 7:969-977. PNWD-SA-8277. doi:10.1016/j.ecolmodel.2008.12.006

2009

Brown R.S., T.J. Carlson, A.E. Welch, J.R. Stephenson, C.S. Abernethy, B.D. Ebberts, and M. Langeslay, et al. 2009. "Assessment of Barotrauma from Rapid Decompression of Depth-Acclimated Juvenile Chinook Salmon Bearing Radiotelemetry Transmitters." Transactions of the American Fisheries Society 138, no. 6:1285-1301. PNNL-SA-72829.
Diefenderfer H.L., K.L. Sobocinski, R.M. Thom, C.W. May, A.B. Borde, S.L. Southard, and J. Vavrinec, et al. 2009. "Multiscale Analysis of Restoration Priorities for Marine Shoreline Planning." Environmental Management 44, no. 4:712-731. PNWD-SA-8063. doi:10.1007/s00267-009-9298-4
Estes M.G., M. Al-Hamdan, R.M. Thom, D. Quattrochi, D.L. Woodruff, C. Judd, and J. Ellis, et al. 2009. "Watershed and Hydrodynamic Modeling for Evaluating the Impact of Land Use Change on Submerged Aquatic Vegetation and Seagrasses in Mobile Bay." In OCEANS 2009: MTS/IEEE Biloxi - Marine Tehcnology for Our Future: Global and Local Challenges. Piscataway, New Jersey:IEEE. PNWD-SA-8733.
Halvorsen M.B., T.J. Carlson, and A.N. Popper. 2009. "Assessment of Cumulative Sound Exposure Level as Criterion for Exposure of Fish to Impulsive Sound." Journal of the Acoustical Society of America 125, no. 4:Article No. 2488. PNWD-SA-10238. doi:10.1121/1.4783301
Huesemann M.H., T.S. Hausmann, T.J. Fortman, R.M. Thom, and V.I. Cullinan. 2009. "In-situ Phytoremediation of PAH and PCB Contaminated Marine Sediments with Eelgrass (Zostera marina)." Ecological Engineering 35, no. 10:1395-1404. PNNL-SA-61742.
Yang Z., and T.P. Khangaonkar. 2009. "Modeling Tidal Circulation and Stratification in Skagit River Estuary Using an Unstructured Grid Ocean Model." Ocean Modelling 28, no. 1-3:34-49. (special issue). PNWD-SA-8278.
Yang Z., T. Khangaonkar, J.M. Chase, and T. Wang. 2009. "Puget Sound Operational Forecast System - A Real-time Predictive Tool for Marine Resource Management and Emergency Responses." In Proceedings of the 11th International Conference on Estuarine and Coastal Modeling, November 4-6, 2009, Seattle, WA, edited by ML Spaulding, 356-372. Reston, Virginia:American Society of Civil Engineers (ASCE). PNNL-SA-71183. doi:10.1061/41121(388)22

2008

Burkholder B.K., G.E. Grant, G.E. Grant, R. Haggerty, T.P. Khangaonkar, and P.J. Wampler. 2008. "Influence of hyporheic flow and geomorphology on temperature of a large, gravel-bed river, Clackamas River, Oregon, USA." Hydrological Processes 22, no. 7:941-953. PNNL-SA-59383.
Heilmayer O., J.J. DiGialleonardo, L. Qian, and G. Roesijadi. 2008. "Stress tolerance of a subtropical Crassostrea virginica population to the combined effects of temperature and salinity." Estuarine, Coastal and Shelf Science 79, no. 1:179-185. PNNL-SA-59951.
Johnson G.E., B. Ebberts, A.E. Giorgi, K. Kuhn, R. Lee, J.H. Plump, and D.A. Stensby, et al. 2008. "Outfall Site and Type Selection for a New Surface Flow Outlet to Pass Juvenile Fish at Bonneville Dam's Second Powerhouse, Columbia River." In Proceedings of the 4th American Fisheries Society Symposium: Fisheries Bioengineering, edited by SV Amaral, D Mathur, EP Taft, 203-216. Bethesda, Maryland:American Fisheries Society. PNNL-SA-42302.
Khangaonkar T.P., and Z. Yang. 2008. "DYNAMIC RESPONSE OF STREAM TEMPERATURES TO BOUNDARY AND INFLOW PERTURBATION DUE TO RESERVOIR OPERATIONS." River Research and Applications 24, no. 4:420-433. PNNL-SA-59954. doi:10.1002/rra.1088
Khangaonkar T.P., Z. Yang, J. Paik, and F. Sotiropoulos. 2008. "Simulation of Hydrodynamics at Stratified Reservoirs Using a Staged Modeling Approach." Journal of Coastal Research. JCR. PNNL-SA-57677.
Mueller R.P., S.S. Southard, C.W. May, W.H. Pearson, and V.I. Cullinan. 2008. "Juvenile Coho Salmon Leaping Ability and Behavior in an Experimental Culvert Test Bed." Transactions of the American Fisheries Society 137, no. 4:941-950. PNWD-SA-7768. doi:10.1577/T06-244.1
Roesijadi G., S. Rezvankhah, A. Perez-Matus, A. Mitelberg, K. Torruellas, and P.A. Van Veld. 2008. "Dietary cadmium and benzo(a)pyrene increased intestinal metallothionein expression in the fish Fundulus heteroclitus." Marine Environmental Research 67, no. 1:25-30. PNNL-SA-61951.
Salice C.J., T.J. Miller, and G. Roesijadi. 2008. "Demographic responses to multi-generation cadmium exposure in two strains of the freshwater gastropod, Biomphalaria glabrata." Archives of Environmental Contamination and Toxicology. PNNL-SA-61311. doi:10.1007/s00244-008-9203-9
Sanders R.D., K.H. Coale, G.A. Gill, A.H. Andrews, and M. Stephenson. 2008. "Recent increase in atmospheric deposition of mercury to California aquatic systems inferred from a 300-year geochronological assessment of lake sediments." Applied Geochemistry 23, no. 3:399-407. PNNL-SA-77275. doi:10.1016/j.apgeochem.2007.12.021
Tang H., J. Paik, F. Sotiropoulos, and T.P. Khangaonkar. 2008. "Three-Dimensional Numerical Modeling of Initial Mixing of Thermal Discharges at Real-Life Configurations." Journal of Hydraulic Engineering 134, no. 9:1210-1224. PNNL-SA-59364. doi:10.1061/(ASCE)0733-9429(2008)134:9(1210)
Thom R.M. 2008. "A.W.D., Larkum, R.J. Orth, C.M. Duarte (eds.), 2006, Seagrasses: Biology, Ecology and Conservation, Springer, ISBN: 978-1-4020-2942-4 (hardback), US$ 99.00, 691 pages." Journal of Experimental Marine Biology and Ecology 354, no. 1:160. PNNL-SA-57379.
Thom R.M., S.L. Southard, A.B. Borde, and P. Stoltz. 2008. "Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries." Estuaries and Coasts 31, no. 5:969-980. PNWD-SA-6070. doi:10.1007/s12237-008-9082-3
Thom R.M., S.S. Southard, A.B. Borde, and P. Stoltz. 2008. "Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries." Estuaries and Coasts 31, no. 5:969-980. PNWD-SA-8093. doi:10.1007/s12237-008-9082-3
Yang Z., and T.P. Khangaonkar. 2008. "Modeling of Coastal Effluent Transport: an Approach to Linking of Far-field and Near-field Models." Acta Oceanologica Sinica 27. PNNL-SA-48553.
Yang Z., and T.P. Khangaonkar. 2008. "Modeling of Salt Intrusion, Intertidal Mixing, and Circulation in a Braided Estuary." In Surface Water Modeling, 52, 171-180. Boca Raton, Florida:Journal of Coastal Research. PNWD-SA-8011.

2007

Cai Y.J., J.R. Rooker, G.A. Gill, and J.P. Turner. 2007. "Bioaccumulation of mercury in pelagic fishes from the northern Gulf of Mexico." Canadian Journal of Fisheries and Aquatic Sciences 64, no. 3:458-469. PNNL-SA-77521. doi:10.1139/F07-017
Frick W.E., W.E. Frick, T.P. Khangaonkar, A.C. Sigleo, and Z. Yang. 2007. "Estuarine-ocean exchange in a North Pacific estuary: comparison of steady state and dynamic model." Estuarine, Coastal and Shelf Science 74, no. 1-2:1-11. PNNL-SA-49044. doi:10.1016/j.ecss.2007.02.019
Han S., R.D. Lehman, K. Choe, and G.A. Gill. 2007. "Chemical and physical speciation of mercury in Offatts Bayou: A seasonally anoxic bayou in Galveston Bay." Limnology and Oceanography 52, no. 4:1380-1392. PNNL-SA-77274.
Heim W.A., K.H. Coale, M. Stephenson, K. Choe, G.A. Gill, and C. Foe. 2007. "Spatial and Habitat-Based Variations in Total and Methyl Mercury Concentrations in Surficial Sediments in the San Francisco Bay-Delta." Environmental Science & Technology 41, no. 10:3501-3507. PNNL-SA-77539.
Huerta Vazquez A.I., and G.A. Gill. 2007. "Determination of the Efficiency of Mixed-Acid Digestions of Sediments." Journal of Undergraduate Research VII. PNNL-SA-51400.
Richmond M.C., Z. Deng, G.R. Guensch, H. Tritico, and W.H. Pearson. 2007. "Mean Flow and Turbulence Characteristics of a Full-Scale Spiral Corrugated Culvert with Implications to Fish Passage." Ecological Engineering 30, no. 4:333-340. PNWD-SA-7227. doi:10.1016/j.ecoleng.2007.04.011
Roesijadi G., S. Rezvankhah, D.M. Binninger, and H. Weissbach. 2007. "Ecdysone Induction of MsrA Protects Against Oxidative Stress in Drosophila." Biochemical and Biophysical Research Communications 354, no. 2:511-516. PNNL-SA-53363.
Thom R.M., and C. Judd. 2007. "Model for Coastal Restoration." In Gulf of Mexico Regional Collaborative (GOMRC) User Group. Richland, Washington:Pacific Northwest National Laboratory. PNNL-SA-56374.
Warnken K.W., P.H. Santschi, K.A. Roberts, and G.A. Gill. 2007. "The cycling and oxidation pathways of organic carbon in a shallow estuary along the Texas Gulf Coast." Estuarine, Coastal and Shelf Science 76, no. 1:69-84. PNNL-SA-77541. doi:10.1016/j.ecss.2007.06.010
Whelan G., W.D. Millard, G.M. Gelston, T.P. Khangaonkar, M.A. Pelton, D.L. Strenge, and Z. Yang, et al. 2007. "Using FRAMES to Manage Environmental and Water Resources." In Proceedings of the World Environmental and Water Resources Congress 2007: Restoring our Natural Habitat, May 15–19, 2007, Tampa, Florida, USA, edited by Karen C. Kabbes. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-53354. doi:10.1061/40927(243)130

2006

Anderson J.W., and R.F. Lee. 2006. "Use of Biomarkers in Oil Spill Risk Assessment in the marine environment." Human and Ecological Risk Assessment 12, no. 6:1192-1222. PNWD-SA-7041.
Dellapenna T.M., M.A. Allison, G.A. Gill, R.D. Lehman, and K.W. Warnken. 2006. "The impact of shrimp trawling and associated sediment resuspension in mud dominated, shallow estuaries." Estuarine, Coastal and Shelf Science 69, no. 3-4:519-530. PNNL-SA-77522. doi:10.1016/j.ecss.2006.04.024
Geist D.R., C.S. Abernethy, K.D. Hand, V.I. Cullinan, J.A. Chandler, and P. Groves. 2006. "Survival, development, and growth of fall Chinook salmon embryos, alevin, and fry exposed to variable thermal and dissolved oxygen regimes." Transactions of the American Fisheries Society 135, no. 6:1462-1477. PNWD-SA-7229.
Geist D.R., C.S. Abernethy, K.D. Hand, V.I. Cullinan, J.A. Chandler, and P. Groves. 2006. "Survival, development, and growth of Snake River fall Chinook salmon Embryos, Alevins, and Fry Exposed to Variable Thermal and Dissolved Oxygen Regimes." Transactions of the American Fisheries Society 135, no. 6:1462-1477. PNWD-SA-7223. doi:10.1577/T05-294.1
Greene R., and E.A. Crecelius. 2006. "Total and Inorganic Arsenic in Mid-Atlantic Marine Fish and Shellfish and Implications for Fish Advisories." Integrated Environmental Assessment and Management 2, no. 4:344-354. PNWD-SA-6989. doi:10.1897/1551-3793(2006)2[344:TAIAIM]2.0.CO;2
Hook S.E., A.D. Skillman, J.A. Small, and I.R. Schultz. 2006. "Dose-Response Relationships in Gene Expression Profiles in Rainbow Trout, Onorhyncus mykiss Exposed to Ethynylestradiol." Marine Environmental Research 62, no. suppl.:S151-S155. PNWD-SA-7173. doi:10.1016/j.marenvres.2006.04.056
Hook S.E., A.D. Skillman, J.A. Small, and I.R. Schultz. 2006. "Gene expression patterns in Rainbow Trout, Oncorhynchus mykiss, exposed to a suite of model toxicants." Aquatic Toxicology 77, no. 4:372-385. PNNL-SA-45577. doi:10.1016/j.aquatox.2006.01.007
Kedderis G.L., A.R. Elmore, E.A. Crecelius, J.W. Yager, and T.L. Goldsworthy. 2006. "Kinetics of Arsenic Methylation by Freshly Isolated B6C3F1 Mouse Hepatocytes." Chemico-Biological Interactions 161, no. 2:139-145. PNWD-SA-7249.
Khangaonkar T.P., S.A. Breithaupt, and F.C. Kristanovich. 2006. "Restoration of Hydrodynamic and Hydrologic Processes in the Chinook River Estuary, Washington – Feasibility Assessment." In 9th International Conference on Estuarine Coastal Modeling Conference, edited by ML Spaulding. New York, New York:American Society of Civil Engineering. PNNL-SA-47566.
Khangaonkar T.P., S.A. Breithaupt, and F.C. Kristanovich. 2006. "Restoration of Hydrodynamic and Hydrologic Processes in the Chinook River Estuary, Washington – Feasibility Assessment." In Estaurine and Coastal Modeling Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, edited by M.L. Spaulding, 734-751. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-48779.
Lee C., Z. Yang, T.P. Khangaonkar, and A. Divers. 2006. "Application of a Hydrodynamic Model for Assessing the Hydraulic Capacity and Flow Field at Willamette Falls Dam, Oregon." In Estuarine and Coastal Modeling. Proceedings of 9th International Conference held in Charleston, SC, Oct.31-Nov. 2, 2005, edited by M.L. Spaulding, 788-805. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7309.
Muirhead E.K., A.D. Skillman, S.E. Hook, and I.R. Schultz. 2006. "Oral Exposure of PBDE-47 in Fish: Toxicokinetics and Reproductive Effects in Japanese Medaka (Oryzias latipes) and Fathead Minnows (Pimephales promelas)." Environmental Science & Technology 40, no. 2:523-528. PNNL-SA-47665.
Yang Z., H. Liu, and T.P. Khangaonkar. 2006. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In Estuarine and Coastal Modeling: Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, edited by M.L. Spaulding, 752-767. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7307.

2005

Anderson J.W., S.I. Hartwell, and M.J. Hameedi. 2005. "Regional Comparisons of Coastal Sediment Contamination Detected by a Biomarker (P450 HRGS; EPA Method 4425)." Environmental Science & Technology 39, no. 1:17-23. PNWD-SA-6434.
Diefenderfer H.L., R.M. Thom, and K. Hofseth. 2005. "A Framework for Risk Analysis for Ecological Restoration Projects in the U.S. Army Corps of Engineers." In Economics and Ecological Risk Assessment: Applications to Watershed Management, Environmental and Ecological Risk Assessment Series, edited by Randall J. F. Bruins, Matthew T. Heberling. 57-105. Boca Raton, Florida:CRC Press. PNNL-SA-37959.
Evans N.R., D.L. Woodruff, and V.L. Trainer. 2005. "Development of coastal upwelling edge detection algorithms associated with harmful algal blooms off the Washington coast using sea surface temperature imagery." In Remote sensing of the coastal oceanic environment: 31 July-1 August, 2005, San Diego, California, USA ; Proceedings of SPIE--the International Society for Optical Engineering, edited by R.J. Frouin, M. Babin, Shubha Sathyendranath, 5885, 58850L. Bellingham, Washington:International Society for Optical Engineering. PNWD-SA-7036.
Evans N.R., G.D. Williams, R.M. Thom, and A.B. Borde. 2005. "Prioritizing Restoration Sites in the Columbia River Estuary." In Proceedings of the 25th Annual ESRI International User Conference, July 25-29, 2005, San Diego, California. Redlands, California:ESRI International. PNWD-SA-7011.
Geist D.R., R.S. Brown, V.I. Cullinan, S.R. Brink, K.B. Lepla, P. Bates, and J.A. Chandler. 2005. "Movement, swimming speed, and oxygen consumption of juvenile white sturgeon in response to changing flows, water temperatures, and light level in the Snake River, Idaho." Transactions of the American Fisheries Society 134, no. 4:803-816. PNWD-SA-6560.
Gray J.E., and B.K. Lasorsa. 2005. "MERCURY SPECIATION IN SOIL SAMPLES FROM THE MARISCAL MERCURY MINE, BIG BEND NATIONAL PARK, TEXAS." Geological Society of America Bulletin 37, no. 7:439. PNWD-SA-7054.
Gray J.E., D.L. Fey, C.W. Holmes, and B.K. Lasorsa. 2005. "Historical deposition and fluxes of mercury in Narraguinnep Reservoir, southwestern Colorado,USA." Applied Geochemistry 20, no. 1:207-220. PNWD-SA-6600.
Hasselbach L., J.M. Ver Hoef, J. Ford, P. Neitlich, E.A. Crecelius, S.D. Berryman, and B. Wolk, et al. 2005. "Spatial patterns of cadmium and lead deposition on and adjacent to National Park Service lands in the vicinity of Red Dog Mine, Alaska." Science of the Total Environment 348. PNWD-SA-6831.
Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2005. "Leaching of BTEX from Aged Crude Oil Contaminated Model Soils: Experimental and Modeling Results." Soil & Sediment Contamination 14. PNNL-SA-44636.
Johnson G.E., S.M. Anglea, N.S. Adams, and T.O. Wik. 2005. "Evaluation of a prototype surface flow bypass for juvenile salmon and steelhead at the powerhouse of Lower Granite Dam, Snake River, Washington, 1996-2000." Fisheries 25, no. 1:138-151. PNWD-SA-5764.
Johnson G.E., S.M. Anglea, N.S. Adams, and T.O. Wik. 2005. "Evaluation of a Prototype Surface Flow Bypass for Juvenile Salmon and Steelhead at the Powerhouse of Lower Granite Dam, Snake River, Washington, 1996-2000." North American Journal of Fisheries Management 25, no. 1:138-151. PNNL-SA-39906. doi:10.1577/M04-024.1
Khangaonkar T.P., Z. Yang, C. DeGasperi, and K. Marshall. 2005. "Modeling Hydrothermal Response of a Reservoir to Modifications at a High-Head Dam." Water International 30, no. 3:378-388. PNWD-SA-7113.
Lee R.F., and J.W. Anderson. 2005. "Significance of Cytochrome P450 System Responses and Levels of Bile Fluorescent Aromatic Compounds in Marine Wildlife Following Oil Spills." Marine Pollution Bulletin 50, no. 7:705-723. PNWD-SA-7005.
Rice C.A., W. Hood, L.M. Tear, C. Simenstad, G.D. Williams, L.L. Johnson, and B.E. Feist, et al. 2005. "Monitoring Rehabilitation in Temperate North American Estuaries." In Monitoring Stream and Watershed Restoration, edited by Philip Roni, Ed Quimby. 167-208. Bethesda, Maryland:American Fisheries Society. PNWD-SA-6423.
Saghir S.A., and I.R. Schultz. 2005. "Toxicokinetics and Oral Bioavailability of Halogenated Acetic Acids Mixtures in Naive and GSTzeta-Depleted Rats." Toxicological Sciences 84, no. 2:214-224. PNWD-SA-6824.
Thom R.M., G.D. Williams, A.B. Borde, J.A. Southard, S.L. Sargeant, D.L. Woodruff, and J.C. Laufle, et al. 2005. "Adaptively Addressing Uncertainty in Estuarine and Near Coastal Restoration Projects." Journal of Coastal Research. JCR 40, no. sp. iss.:94-108. PNNL-SA-40819.
Thom R.M., G.D. Williams, and H.L. Diefenderfer. 2005. "Balancing the Need to Develop Coastal Areas with the Desire for an Ecologically Functioning Coastal Environment: Is Net Ecosystem Improvement Possible?." Restoration Ecology 13, no. 1:193-203. PNWD-SA-6354. doi:10.1111/j.1526-100X.2005.00024.x
Tsuji J.S., M.D. Van Kerkhove, R. Kaetzel, C. Scrafford, P. Mink, L.M. Barraj, and E.A. Crecelius, et al. 2005. "Evaluation of Exposure to Arsenic in Residential Soil." Environmental Health Perspectives 113, no. 12:1735-1740. PNWD-SA-6990. doi:10.1289/ehp.8178
Wunschel D.S., I.R. Schultz, A.D. Skillman, and K.L. Wahl. 2005. "Method for Detection and Quantitation of Fathead Minnow Vitellogenin (Vtg) by Liquid Chromatography and Matrix Assisted Laser Desorption/ Ionization Mass Spectrometry." Aquatic Toxicology 73. PNWD-SA-6963.
Yang Z., H. Liu, and T.P. Khangaonkar. 2005. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In The 9th International Conference on Estuarine and Coastal Modeling. Reston, Virginia:American Society of Civil Engineers. PNWD-SA-7228.

2004

Brandenberger J.M., P. Louchouarn, B. Herbert, and P. Tissot. 2004. "Geochemical and hydrodynamic controls on arsenic and trace metal cycling in a seasonally stratified US sub-tropical reservoir." Applied Geochemistry 19, no. 10:1601-1623. PNWD-SA-6064.
Brenner R.C., V.S. Magar, J.A. Ickes, J.A. Ickes, E.A. Foote, E.A. Foote, and J.E. Abbott, et al. 2004. "Long-Term Recovery of PCB-Contaminated Surface Sediments at the Sangamo-Weston / Twelvemile Creek / Lake Hartwell Superfund Site." Environmental Science & Technology 38, no. 8:2328-2337. PNWD-SA-6529.
Diefenderfer H.L., S.L. Sargeant, R.M. Thom, A.B. Borde, P.F. Gayaldo, C.A. Curtis, and B.L. Court, et al. 2004. "Demonstration Dock Designed to Benefit Eelgrass Habitat Restoration (Washington)." Ecological Restoration 22, no. 2:140-141. PNWD-SA-6315.
Evans N.R., D.L. Woodruff, and V.L. Trainer. 2004. "Using Remotely-Sensed Sea-Surface Temperature Data to Track Movement of the Juan de Fuca Eddy in Association with Pacific Northwest Coast Harmful Algal Blooms." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, edited by T Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNWD-SA-5801.
Gray J.E., M.E. Hines, P.L. Higueras, I. Adatto, and B.K. Lasorsa. 2004. "Mercury Speciation and Microbial Transformations in Mine Wastes, Stream Sediments, and Surface Waters at the Almaden Mining District, Spain." Environmental Science & Technology 38, no. 16:4285-4292. PNWD-SA-6599. doi:10.1021/es040359d
Guensch G.R., M.C. Richmond, H. Tritico, and W.H. Pearson. 2004. "Characterization of Turbulent Open Channel Flow in a Full-Scale Spiral Corrugated Culvert." In Critical Transitions In Water And Environmental Resources Management: Proceedings of the World Water and Environmental Resources Congress, edited by G Sehlke, DF Hayes and DK Stevens. Reston, Virginia:American Society of Civil Engineers. PNNL-SA-40895. doi:10.1061/40737(2004)183
Huesemann M.H. 2004. "Biodegradation and Bioremediation of Petroleum Pollutants in Soil." In Applied Bioremediation and Phytoremediation, edited by A. Singh, O.P. Ward. 13-34. Berlin Heidelberg:Springer Verlag. PNNL-SA-39097.
Huesemann M.H. 2004. "The Failure of Eco-Efficiency to Guarantee Sustainability: Future Challenges for Industrial Ecology." Environmental Progress 23, no. 4:264-270. PNNL-SA-42241.
Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2004. "Does Bioavailability Limit Biodegradability? A Comparison of Hydrocarbon Biodegradation and Desorption Rates in Aged Soils." Biodegradation 15, no. 4:261-274. PNNL-SA-40755.
Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2004. "Reduction of Toxicity and PAH Bioaccumulation Potential During Bioremediation of Petroleum Contaminated Soils." In The Seventh International In Situ and On-Site Bioremediation Symposium, edited by V Magar and ME Kelley, Paper No. J-05. Columbus, Ohio:Battelle Press. PNNL-SA-40756.
Huesemann M.H., T.S. Hausmann, T.J. Fortman, R.M. Thom, E.A. Foote, and E.A. Foote. 2004. "Using Eelgrass (Zostera marina) for Phytoremediation of PAH-Contaminated Marine Sediments." In The Seventh International In Situ and On-Site Bioremediation Symposium, edited by VS Magar and ME Kelley, Paper No. N-14. Columbus, Ohio:Battelle Press. PNWD-SA-6360.
Johnson G.E., J. Hedgepeth, J.R. Skalski, and A.E. Giorgi. 2004. "A Markov Chain Analysis of Fish Movements to Determine Entrainment Zones." Fisheries Research 69, no. 3:349-358. PNWD-SA-6170.
Johnson G.E., J. Hedgepeth, J.R. Skalski, and A.E. Giorgi. 2004. "A Markov chain analysis of fish movements to determine entrainment zones." Fisheries Research 69, no. 3:349-358. PNNL-SA-36658.
Keys D.A., I.R. Schultz, D.A. Mahle, and J.W. Fisher. 2004. "A Quantitative Description of Suicide Inhibition of Dichloroacetic Acid in Rats and Mice." Toxicological Sciences 82, no. 2:381-393. PNWD-SA-6816.
Malins D.C., J.J. Stegeman, J.W. Anderson, P.M. Johnson, J. Gold, and K.M. Anderson. 2004. "Structural Changes in Gill DNA Reveal the Effects of Contaminants on Puget Sound Fish." Environmental Health Perspectives 112, no. 5:511-515. PNWD-SA-6480.
Neff J.M., P.D. Boehm, R.K. Kropp, W.A. Stubblefield, and D.S. Page. 2004. "Monitoring Recovery of Prince William Sound, Alaska, Following the Exxon Valdez Oil Spill: Bioavailability of PAH in Offshore Sediments." In 2005 International Oil Spill Conference prevention, preparedness, response, and restoration: May 15-19, 2005, Miami Beach Convention Center, Miami Beach, Florida, 9562-9568. Washington, Dc:American Petroleum Institute. PNWD-SA-6993.
Thom R.M., G.D. Williams, and A.B. Borde. 2004. "Conceptual Models as a Tool for Assessing, Restoring, and Managing Puget Sound Habitats and Resources." In 2003 Georgia Basin/Puget Sound Resarch Conference Proceedings, March 31-April 3, 2003, Vancouver, BC (Canada), edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNWD-SA-5814.
Williams G.D., R.M. Thom, J.A. Southard, S.L. Sargeant, D.K. Shreffler, and M.T. Stamey. 2004. "Assessing Overwater Structure-Related Predation on Juvenile Salmon: A Field Study and Protocol for Weighing the Evidence." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Mary 31- April 3, 2003, Vancouver, BC (Canada), edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNNL-SA-37954.
Williams G.D., R.M. Thom, N.R. Evans, A.B. Borde, and P.N. Best. 2004. "Bainbridge Island Nearshore Habitat Characterization and Assessment." In 2003 Georgia Basin/Puget Sound Research Conference, March 31 - April 3, 2003, Vancouver, BC (Canada), edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNWD-SA-5819.
Woodruff D.L., A.B. Borde, R. Garono, C. Simenstad, and J. Norris. 2004. "Nearshore Habitat Mapping In Hood Canal Using Underwater Video and Hyperspectral Imaging." In 2003 Georgia Basin/Puget Sound Research Conference, March 31 - April 3, 2003, Vancouver, BC, edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNWD-SA-5812.

2003

Allen-Gil S.M., J. Ford, B.K. Lasorsa, M. Monetti, T. Vlasova, and D.H. Landers. 2003. "Heavy Metal Contamination in the Taimyr Peninsula, Siberian Arctic." Science of the Total Environment 301. PNWD-SA-6050.
Anderson J.W., J.M. Jones, D.L. McCoy, A. Fujita, T. Yamamoto, and S. Iijima. 2003. "Comparison Between a Rapid Biological Screening Method (EPA 4425) for TCDDs/TCDFs and Chemical Analytical Methods." In Proceedings to Dioxin 2003: The 23rd International Symposium on Halogenated Environmental Organic Pollutants and Persistent Organic Pollutants published in Organohalogen Compounds Vol. 60, 60, 271-274. Bayreuth:Eco Informa Press. PNWD-SA-6073.
Borde A.B., R.M. Thom, S. Rumrill, and L.M. Miller. 2003. "Geospatial Habitat Analysis in Pacific Northwest Coastal Estuaries." Estuaries 26, no. 4B:1104-1116. PNWD-SA-5811.
Diefenderfer H.L., S.L. Sargeant, R.M. Thom, A.B. Borde, P.F. Gayaldo, C.A. Curtis, and B.L. Court, et al. 2003. "Dock Design to Facilitate the Restoration of Eelgrass in Port Townsend Bay, Washington." In Assembling the Pieces - Restoration, Design and Landscape Ecology: Proceedings of the Annual Conference of the Society for Ecological Restoration International, November 19-22, 2003, Austin, Texas. Tucson, Arizona:Society for Ecological Restoration International. PNWD-SA-6035.
Geist D.R., R.S. Brown, V.I. Cullinan, M.G. Mesa, S.P. VanderKooi, and C.A. McKinstry. 2003. "Relationships Between Metabolic Rate, Muscle Electromyograms and Swim Performance of Adult Chinook Salmon." Journal of Fish Biology 63, no. 4:970-989. PNNL-SA-37165.
Geist D.R., R.S. Brown, V.I. Cullinan, M.G. Mesa, S.P. VanderKooi, and C.A. McKinstry. 2003. "Relationships between metabolic rate, muscle electromyograms, and swim performance of adult chinook salmon." Journal of Fish Biology 63, no. 4:970-989. PNNL-SA-39189.
Goward S.N., P.E. Davis, D. Fleming, L.M. Miller, and J.R. Townshend. 2003. "Empirical comparison of Landsat 7 and IKONOS multispectral measurements for selected Earth Observation System (EOS) validation sites." Remote Sensing of Environment 88, no. 1-3:80-99. PNWD-SA-6382.
Gray J.E., M.E. Hines, H. Biester, and B.K. Lasorsa. 2003. "Mercury Methylation in Mine Wastes Collected from Abandoned Mercury Mines in the USA." Journal de physique IV 107. PNWD-SA-6084.
Holt A.C., R.P. Stumpf, M.C. Tomlinson, V. Ransibrahmanakul, V.L. Trainer, and D.L. Woodruff. 2003. "Applications of Satellite Ocean Color Imagery for Detecting and Monitoring Harmful Algal Blooms in the Olympic Peninsula Region." In Coastal Zone 03: Proceedings of the 13th Biennial Coastal Zone Conference, Baltimore MD, July 13-17, 2003.. Charleston, South Carolina:NOAA Coastal Services Center. PNWD-SA-6176. Applications of Satellite Ocean Color Imagery for Detecting and Monitoring Harmful Algal Blooms in the Olympic Peninsula Region
Huesemann M.H. 2003. "Recognizing the Limits of Environmental Science and Technology." Environmental Science & Technology 37, no. 13:259A-261A. PNNL-SA-36441.
Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2003. "Assessment of Bioavailability Limitations During Slurry Biodegradation of Petroleum Hydrocarbons in Aged Soils." Environmental Toxicology and Chemistry 22, no. 12:2853-2860. PNNL-SA-40844.
Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2003. "Biodegradation of Hopane Prevents Use As Conservative Biomarker During Bioremediation of PAHs in Petroleum Contaminated Soils." Bioremediation Journal 7, no. 2:111-117. PNNL-SA-36442.
Paulay G., R.K. Kropp, P.K. Ng, and L.G. Eldredge. 2003. "The crustaceans and pycnogonids of the Mariana Islands." Micronesica 35-36. PNNL-SA-36621.
Powell D.B., R.C. Palm, A.D. Skillman, and K. Godtfredsen. 2003. "Immunocompetence of Juvenile Chinook Salmon Against Listonella anguillarum Following Dietary Exposure to Aroclor (R) 1254." Environmental Toxicology and Chemistry 22, no. 2:285-295. PNWD-SA-6194.
Rios A.F., X.A. Alvarez-Salgado, F.F. Perez, L.S. Bingler, J. Aristegui, and L. Memery. 2003. "Carbon dioxide along WOCE line A14: Water masses characterization and anthropogenic entry." Journal of Geophysical Research. C. (Oceans) 108, no. c4. PNWD-SA-6081. doi:10.1029/200JC000366
Sargeant S.L., R.M. Thom, H.L. Diefenderfer, A.B. Borde, and J.A. Southard. 2003. "Evaluation of Methods to Increase Light under Large Overwater Structures." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Vancouver, BC, March 31 - April 3, 2003, edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNNL-SA-37320.
Schultz I.R., A.D. Skillman, J. Nicolas, D.G. Cyr, and J.J. Nagler. 2003. "Short-term exposure to 17alpha-ethynylestradiol decreases the fertility of sexually maturing male rainbow trout (Oncorhynchus mykiss)." Environmental Toxicology and Chemistry 22, no. 6:1272-1280. PNNL-SA-39055.
Southard J.A., G.D. Williams, S.L. Sargeant, H.L. Diefenderfer, and M.L. Blanton. 2003. "Using Advanced Scientific Diving Technologies to Assess the Underwater Environment." In 2003 Georgia Basin/Puget Sound Research Conference Proceedings, Vancouver, BC, March 31 - April 3, 2003, edited by TW Droscher and DA Fraser. Olympia, Washington:Puget Sound Action Team. PNNL-SA-37344.
Thom R.M., A.B. Borde, S. Rumrill, D.L. Woodruff, G.D. Williams, J.A. Southard, and S.L. Sargeant. 2003. "Factors Influencing Spatial and Annual Variability in Eelgrass (Zostera marina L.) Meadows in Willapa Bay, Washington, and Coos Bay, Oregon, Estuaries." Estuaries 26, no. 4B:1117-1129. PNWD-SA-5838.
West J.M., G.D. Williams, S.P. Madon, and J.B. Zedler. 2003. "Integrating spatial and temporal variability into the analysis of fish food web linkages in Tijuana Estuary." Environmental Biology of Fishes 67. PNWD-SA-6314.

2002

Brenner R.C., V.S. Magar, J.A. Ickes, J.A. Ickes, J.E. Abbott, J.E. Abbott, and S.A. Stout, et al. 2002. "Characterization and Fate of PAH-contaminated Sediments at the Wyckoff/Eagle Harbor Superfund Site." Environmental Science & Technology 36, no. 12:2605-2613. PNWD-SA-5798.
Gray J.E., J.G. Crock, and B.K. Lasorsa. 2002. "Mercury Methylation at Mercury Mines In The Humboldt River Basin, Nevada, USA." Geochemistry. Exploration, Environment, and Analysis 2, no. 2:143-149. PNWD-SA-5598.
Hedgepeth J., G.E. Johnson, J.R. Skalski, and J. Burczynski. 2002. "Active Fish Tracking Sonar (AFTS) for Assessing Fish Behaviour." In European Conference on Underwater Acoustics, published in "Acta Acustica United with Acustica", 88, 739-742. Stuttgart:S. Hirzel Verlag. PNWD-SA-5739.
Huesemann M.H., A.D. Skillman, and E.A. Crecelius. 2002. "The Inhibition of Marine Nitrification by Ocean Disposal of Carbon Dioxide." Marine Pollution Bulletin 44, no. 2:142-148. PNNL-SA-33944.
Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2002. "Microbial Factors Rather Than Bioavailability Limit the Rate and Extent of PAH Biodegradation in Aged Crude Oil Contaminated Model Soils." Bioremediation Journal 6, no. 4:321-336. PNNL-SA-34838.
Johnson R.L., M. Simmons, C.S. Simmons, and S.L. Blanton. 2002. "A New Multibeam Sonar Technique for Evaluating Fine-Scale Fish Behavior Near Hydroelectric Dam Guidance Structures." In Behavioral Technologies for Fish Guidance, American Fisheries Society Symposium, 2001, edited by Coutant, C., 26, 161-170. Bethesda, Maryland:Amer. Fisheries Society. PNNL-SA-34097.
Pearson W.H., M.C. Richmond, and J. Schafer. 2002. "Culvert Testing Program for Juvenile Salmonid Passage." In Proceedings of the International Conference on Ecology and Transportation, Keystone, CO, September 24-28, 2001., 92-97. Raleigh, North Carolina:NC State University, Center for Transportation and the Environment. PNNL-SA-37260.
Saghir S.A., and I.R. Schultz. 2002. "Low-Dose Pharmacokinetics and Oral Bioavailability of Dichloroacetate in Naive and GST-zeta Depleted Rats." Environmental Health Perspectives 110, no. 8:757-763. PNWD-SA-5424.
Schultz I.R., J.L. Merdink, A. Gonzalez-Leon, and R.J. Bull. 2002. "Dichloroacetate toxicokinetics and disruption of tyrosine catabolism in B6C3F1 mice: dose-response relationships and age as a modifying factor." Toxicology. PNWD-SA-5505.
Steimle F., K.L. Foster, R.K. Kropp, and B. Conlin. 2002. "Benthic macrofauna productivity enhancement by an artificial reef in Delaware Bay, USA." ICES Journal of Marine Science 59. PNWD-SA-6196.
Thom R.M., A.B. Borde, G.D. Williams, J.A. Southard, and S.L. Blanton. 2002. "Adaptive Management to Improve Seagrass Restoration Success." In Watershed 2002: Proceedings of the Water Environment Federation, February 23-27, 2002, Fort Lauderdale, Florida, 362-373. Alexandria, Virginia:Water Environment Federation. PNWD-SA-5520.
Thom R.M., R. Zeigler, and A.B. Borde. 2002. "Floristic Development Patterns in a Restored Elk River Estuarine Marsh, Grays Harbor, Washington." Restoration Ecology 10, no. 3:487-496. PNNL-SA-37599.
Thom R.M., S.L. Blanton, A.B. Borde, G.D. Williams, D.L. Woodruff, and M.H. Huesemann. 2002. "Investigations into Wetland Carbon Sequestration as Remediation for Global Warming." In International Conference on Wetlands and Remediation; Wetlands and Remediation II, edited by KW Nehring and SE Brauning, 311-320. Columbus, Ohio:Battelle Press. PNNL-SA-35183.

2001

Adams N., G.E. Johnson, D.W. Rondorf, S.M. Anglea, and T.O. Wik. 2001. "Biological Evaluation of the Behavioral Guidance Structure at Lower Granite Dam on the Snake River, Washington in 1998." In Behavioral Technologies for Fish Guidance, American Fisheries Society Symposium, 26, 145-160. Bethesda, Maryland:American Fisheries Society. PNWD-SA-5614.
Clements W., S.N. Luoma, J. Gerritsen, A. Hatch, P. Jepson, T. Reynoldson, and R.M. Thom. 2001. "Stressor Interactions in Ecological Systems." In Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, edited by Donald J. Baird and G. Allen Burton, Jr. 215-233. Pensacola, Florida:SETAC Press. PNWD-SA-5436.
Huesemann M.H., T.S. Hausmann, and T.J. Fortman. 2001. "Assessment of mass-transfer limitations during slurry bioremediation of PAHs and alkanes in aged soils." In Bioremediation Of Energetics, Phenolics, And Polycyclic Aromatic Hydrocarbons: the Sixth International In Situ and On-Site Bioremediation Symposium, San Diego, California, June 4-7, 2001, 3, 157-163. Columbus, Ohio:Battelle Press. PNNL-SA-31635.
Kohn N.P., and R.K. Kropp. 2001. Year 3 Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters Near the United Heckathorn Superfund Site, Richmond, California. PNNL-13286. Richland, WA: Pacific Northwest National Laboratory. Year 3 Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters Near the United Heckathorn Superfund Site, Richmond, California
Long W.L., and R.M. Thom. 2001. "Part III. Seagrass Habitat Conservation. Chapter 21. Improving seagrass habitat quality." In Global Seagrass Research Methods. 407-445. Amsterdam:Elsevier. PNWD-SA-5555.
Luoma S.N., W. Clements, J. Gerritsen, A. Hatch, P. Jepson, T. Reynoldson, and R.M. Thom. 2001. "Separating stressor influences from environmental variability: eight case studies from aquatic and terrestrial ecosystems." In Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, edited by Donald J. Baird and G. Allen Burton, Jr. 179-215. Pensacola, Florida:SETAC Press. PNWD-SA-5435.
Luoma S.N., W. Clements, T. Dewitt, J. Gerritsen, A. Hatch, P. Jepson, and T. Reynoldson, et al. 2001. "Role of Environmental Variability in Evaluating Stressor Effects." In Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, edited by Donald J. Baird and G. Allen Burton, Jr. 141-179. Pensacola, Florida:SETAC Press. PNWD-SA-5437.
Madon S.P., G.D. Williams, J.M. West, and J.B. Zedler. 2001. "The importance of marsh access to growth of the California killifish, Fundulus parvipinnis, evaluated through bioenergetics modeling." Ecological Modelling 136, no. 2-3:149-165. PNWD-SA-5441.
Paluszkiewicz T., L.F. Hibler, M.C. Richmond, D.J. Bradley, and S.A. Thomas. 2001. "Modeling the Potential Radionuclide Transport by the Ob and Yenisey Rivers to the Kara Sea." Marine Pollution Bulletin 43, no. 1-6:111-121. PNNL-SA-30639.
Riley R.G., C.J. Thompson, M.H. Huesemann, Z. Wang, B.M. Peyton, T.J. Fortman, and M.J. Truex, et al. 2001. "Artificial Aging of Phenanthrene in Porous Silicas Using Supercritical Carbon Dioxide." Environmental Science & Technology 35, no. 18:3707-3712. PNNL-SA-34512.
Schultz I.R., G.A. Orner, J.L. Merdink, and A.D. Skillman. 2001. "Dose-response relationships and pharmacokinetics of vitellogenin in rainbow trout after intravascular administration of 17 alpha-ethynylestradiol." Aquatic Toxicology 51, no. 3:305-318. PNWD-SA-5211.
Thom R.M., A.B. Borde, G.D. Williams, J.A. Southard, S.L. Blanton, and D.L. Woodruff. 2001. "Effects of Multiple Stressors on Eelgrass Restoration Projects." In Proceedings of Puget Sound Research 2001, the fifth Puget Sound Research Conference, edited by Droscher, Toni, 1. Olympia, Washington:Puget Sound Water Quality Action Team. PNWD-SA-5434. Effects of Multiple Stressors on Eelgrass Restoration Projects
Thom R.M., A.B. Borde, K.O. Richter, and L.F. Hibler. 2001. "Influence of Urbanization on Ecological Processes in Wetlands." In Land Use and Watersheds : Human Influence on Hydrology and Geomorphology in Urban and Forest Areas. Water Science and Application, edited by Mark Wigmosta and Stephen Burges, 2, 5-16. Washington, District Of Columbia:American Geophysical Union. PNWD-SA-5187.
Thom R.M., A.B. Borde, S.L. Blanton, D.L. Woodruff, and G.D. Williams. 2001. "The Influence of Climate Variation and Change on Structure and Processes in Nearshore Vegetated Communities of Puget Sound and other Northwest Estuaries." In Proceedings of the 2001 Puget Sound Research Conference. Olympia, Washington:Puget Sound Water Quality Action Team. PNNL-SA-34977.

2000

Antrim L.D., and N.P. Kohn. 2000. POST-REMEDIATION BIOMONITORING OF PESTICIDES AND OTHER CONTAMINANTS IN MARINE WATERS AND SEDIMENT NEAR THE UNITED HECKATHORN SUPERFUND SITE, RICHMOND, CALIFORNIA. PNNL-13059-Rev 1. Richland, WA: Pacific Northwest National Laboratory. POST-REMEDIATION BIOMONITORING OF PESTICIDES AND OTHER CONTAMINANTS IN MARINE WATERS AND SEDIMENT NEAR THE UNITED HECKATHORN SUPERFUND SITE, RICHMOND, CALIFORNIA
Antrim L.D., and N.P. Kohn. 2000. Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters and Sediment Near the United Heckathorn Superfund Site, Richmond, California. PNNL-13059. Richland, WA: Pacific Northwest National Laboratory. Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters and Sediment Near the United Heckathorn Superfund Site, Richmond, California
Antrim L.D., and N.P. Kohn. 2000. Post-Remediation Biomonitoring of Pesticides in Marine Waters Near the United Heckathorn Site, Richmond, California. PNNL-11911-Rev 1. Richland, WA: Pacific Northwest National Laboratory. Post-Remediation Biomonitoring of Pesticides in Marine Waters Near the United Heckathorn Site, Richmond, California
Emmett R., R. Llanso, J. Newton, R.M. Thom, M. Hornberger, C. Morgan, and C. Levings, et al. 2000. "Geographic Signatures of North American West Coast Estuaries." Estuaries 23, no. 6:765-792. PNWD-SA-5430.
Geist D.R., C.S. Abernethy, S.L. Blanton, and V.I. Cullinan. 2000. "The use of electromyogram telemetry to estimate energy expenditure of adult fall chinook salmon." Transactions of the American Fisheries Society 129, no. 1:126-135. PNNL-SA-27849.
Johnson G.E., N.S. Adams, R.L. Johnson, D.W. Rondorf, D.D. Dauble, and T.Y. Barila. 2000. "Evaluation of the Prototype Surface Bypass for Salmonid Smolts in Spring 1996 and 1997 at Lower Granite Dam on the Snake River, Washington." Transactions of the American Fisheries Society 129, no. 2:381-397. PNWD-SA-5610.
Johnson R.L., and G.E. Johnson. 2000. "Fish Behavior Relative to a Prototype Surface Bypass and Collector (SBC) at Lower Granite Dam Using Innovative Hydroacoustic Techniques." In Advances in Fish Passage Technology, edited by Mufeed Odeh, 57-67. Bethesda, Maryland:American Fisheries Society. PNWD-SA-4665.
Petrie G.M., V.I. Cullinan, L.L. Cadwell, J.L. Downs, E.M. Perry, and J. Turner. 2000. "Integration of Hyperspectral Data for Rangeland Characterization." In International Archives of Photogrammetry and Remote Sensing (IAPRS), 33, 1142-1148. Stuttgardt:ISPRS. PNNL-SA-32954.
Thom R.M. 2000. "Adaptive management of coastal ecosystem restoration projects." Ecological Engineering 15, no. 3-4:365-372. PNWD-SA-5738.
Trainer V.L., N.G. Adams, B.D. Bill, C.M. Stehr, J.C. Wekell, P. Moeller, and M. Busman, et al. 2000. "Domoic acid production near California coastal upwelling zones, June 1998." Limnology and Oceanography 45, no. 8:1818-1833. PNWD-SA-5800.

1999

Bloom N.S., and B.K. Lasorsa. 1999. "Changes in mercury speciation and the release of methyl mercury as a result of marine sediment dredging activities." Science of the Total Environment 238, no. special issue:379-385. PNNL-SA-31275.
Crecelius E.A., L.F. Lefkovitz, and V.I. Cullinan. 1999. "The Sound is Cleaner: A Century of Contaminant Trends Observed from Dated Cores." In Oceans'99 MTS/IEEE Proceedings. Riding the Crest into the 21st Century., 3, 1381-1394. Piscataway, New Jersey:Oceans '99 MTS/IEEE Conference Committee. PNNL-SA-4638.
Nassar A.F., A.F. Nassar, S.V. Lucas, S.V. Lucas, and S.A. Thomas. 1999. "Determination of O-isopropyl methylphosphonic acid in living microorganism-agar matrixes using ion chromatography conductivity detection." Analytical Letters 32, no. 5:1023-1035. PNNL-SA-31695.
Pearson W.H., R.A. Elston, R.W. Bienert, A.S. Drum, and L.D. Antrim. 1999. "Why did the Prince William Sound, Alaska, Pacific herring (Clupea pallasi) fisheries collapse in 1993 and 1994? Review of hypotheses." Canadian Journal of Fisheries and Aquatic Sciences 56, no. 4:711-737. PNWD-SA-4387.
Valette-Silver N.J., G.F. Riedel, E.A. Crecelius, H. Windom, R.G. Smith, and S.S. Dolvin. 1999. "Elevated arsenic concentrations in bivalves from the southeast coasts of the USA." Marine Environmental Research 48, no. 4-5:311-333. PNWD-SA-4650.

1998

Pearson W.H., S.M. Al-Ghais, J.M. Neff, C.J. Brandt, K.F. Wellman, and T. Green. 1998. "Assessment of Damages to Commercial Fisheries and Marine Environment of Fujairah, United Arab Emirates, Resulting from the Seki Oil Spill of March 1994: A Case Study." In Transformations of Middle Eastern Natural Environments: Legacies and Lessons, Bulletin series. 407-428. New Haven, Connecticut:Yale School of Forestry & Environmental Studies. PNWD-SA-4668.
Randolph R.C., J.T. Hardy, S.W. Fowler, A.G. Price, and W.H. Pearson. 1998. "Toxicity and Persistence of Nearshore Sediment Contamination Following the 1991 Gulf War." Environment International 24. PNNL-SA-31727.

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