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Energy and Environment Directorate

Joonhoon Kim

(509) 372-6176

PNNL Patents

PNNL Publications


  • Dai Z., K.R. Pomraning, E.A. Panisko, B.A. Hofstad, K.B. Campbell, J. Kim, and A.L. Robles, et al. 2021. "Genetically engineered oleaginous yeast Lipomyces starkeyi for sesquiterpene a-zingiberene production." ACS Synthetic Biology 10, no. 5:1000-1008. PNNL-SA-156626. doi:10.1021/acssynbio.0c00503
  • Kim J., S.T. Coradetti, Y. Kim, Y. Gao, J. Yaegashi, J.D. Zucker, and N. Munoz Munoz, et al. 2021. "Multi-omics driven metabolic network reconstruction and analysis of lignocellulosic carbon utilization in Rhodosporidium toruloides." Frontiers in Bioengineering and Biotechnology 8. PNNL-SA-156767. doi:10.3389/fbioe.2020.612832
  • Kirby J., G.M. Geiselman, J. Yaegashi, J. Kim, X. Zhuang, M. Tran-Gyamfi, and J. Prahl, et al. 2021. "Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass." Biotechnology for Biofuels 14, no. 1:Article No. 101. PNNL-SA-162406. doi:10.1186/s13068-021-01950-w
  • Lawson C., J.M. Marti, T. Radivojevic, S.R. Jonnalagadda, R. Gentz, N.J. Hillson, and S. Peisert, et al. 2021. "Machine learning for metabolic engineering: A review." Metabolic Engineering 63. PNNL-SA-158037. doi:10.1016/j.ymben.2020.10.005
  • Pomraning K.R., Z. Dai, N. Munoz Munoz, Y. Kim, Y. Gao, S. Deng, and J. Kim, et al. 2021. "Integration of proteomics and metabolomics into the Design, Build, Test, Learn cycle to improve 3-hydroxypropionic acid production in Aspergillus pseudoterreus." Frontiers in Bioengineering and Biotechnology 9. PNNL-SA-149911. doi:10.3389/fbioe.2021.603832
  • Roy S., T. Radivojevic, M. Forrer, J.M. Marti, S.R. Jonnalagadda, T. Backman, and W. Morrell, et al. 2021. "Multiomics data collection, visualization, and utilization for guiding metabolic engineering." Frontiers in Bioengineering and Biotechnology 9. PNNL-SA-159094. doi:10.3389/fbioe.2021.612893


  • Gao Y., T.L. Fillmore, N. Munoz Munoz, G. Bentley, C.W. Johnson, J. Kim, and J. Meadows, et al. 2020. "High-throughput large-scale targeted proteomics assays for quantifying pathway proteins in Pseudomonas putida KT2440." Frontiers in Bioengineering and Biotechnology 8. PNNL-SA-156111. doi:10.3389/fbioe.2020.603488


  • Kim J., M. Tremaine, J. Grass, H. Purdy, R. Landick, P.J. Kiley, and J.L. Reed. 2019. "Systems Metabolic Engineering of Escherichia coli Improves Coconversion of Lignocellulose-Derived Sugars." Biotechnology Journal 14, no. 9:Article No. 1800441. PNNL-SA-148827. doi:10.1002/biot.201800441
  • Pomraning K.R., J.R. Collett, J. Kim, E.A. Panisko, D.E. Culley, Z. Dai, and S. Deng, et al. 2019. "Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate." Biotechnology for Biofuels 12. PNNL-SA-142743. doi:10.1186/s13068-019-1510-z


  • George K.W., M.G. Thompson, J. Kim, E. Baidoo, G. Wang, V. Benites, and C.J. Petzold, et al. 2018. "Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli." Metabolic Engineering 47. PNNL-SA-138198. doi:10.1016/j.ymben.2018.03.004

Energy and Environment

Core Research Areas